Releases: bcgsc/tigmint
Releases · bcgsc/tigmint
Tigmint v1.2.10
Tigmint v1.2.9
- Release Tigmint v1.2.9
- Use
sensitive=True
option for ntLink mapping (#113)
Tigmint v1.2.8
- Release Tigmint v1.2.8
- When
mapping=ntLink
is added to thetigmint-make
command, usentLink
for mapping long reads to the draft assembly instead ofminimap2
(#110)- This ntLink mapping approach doesn't split the long reads into pseudo-linked reads
- Add option to use
memusg
for benchmarking the pipeline (if found in PATH) (#110) - Bugfix to
tigmint-cut
(#110) - Benchmarking fix (#109)
Tigmint v1.2.7
- Release Tigmint v1.2.7
- Remove packaged
btllib
, making it a dependency - Documentation fixes
Tigmint v1.2.6
- Release Tigmint v1.2.6
- In long-read mode, Tigmint (Tigmint-long) now accepts long read files in fa or fq formats, gzipped or uncompressed (
.fa
,.fa.gz
,.fq
.,.fq.gz
- Update btllib to v1.4.1
- Add
SORT_OPTS
parameter for specifying additional parameters forsort
- Bugfixes
- Documentation improvements
Tigmint v1.2.5
- Updated
tigmint-make
file to include tigmint steps as targets, such astigmint-index
(perform the bwa index step) - Updated
tigmint-make
to includedist
parameter in naming convention of output files
Tigmint v1.2.4
- Changed the default value for genome size parameter: now
G=0
if unset - Added extra checks for
G
to be set if usingspan=auto
intigmint-make
1.2.3
- Release version 1.2.3
- Added
tigmint_molecule_paf.py
for inferring molecule extents from minimap2 paf mappings (tigmint-long
) - Added
tigmint_estimate_dist.py
to estimate thedist
parameter from the first 1M reads (tigmint-long
) - Translated
long-to-linked-pe
script to C++ (thanks @jowong4) - Documentation updates
- Bugfixes
Tigmint Version 1.2.2
This version of Tigmint includes a couple of changes to the tigmint-long
option:
long-to-linked
produces a fastq file of cut long reads instead of fasta- the
dist
parameter is calculated automatically based on the distribution of long read lengths
1.2.1
Tigmint Version 1.2.1
This version corrects a bug introduced in version 1.2.0. The bug affected barcode assignment during long read processing, which then prevented proper corrections.