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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 100 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 48 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 6

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 25 6

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 66 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 39 2

Repositories

Showing 10 of 117 repositories
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 3 Updated Feb 15, 2025
  • pori_python Public
    bcgsc/pori_python’s past year of commit activity
    Python 0 GPL-3.0 1 1 2 Updated Feb 14, 2025
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 2 Updated Feb 14, 2025
  • HLAminer Public

    ⛏ HLA predictions from NGS shotgun data

    bcgsc/HLAminer’s past year of commit activity
    Perl 52 15 0 0 Updated Feb 13, 2025
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 3 Updated Feb 13, 2025
  • ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    bcgsc/ntEdit’s past year of commit activity
    C++ 66 GPL-3.0 9 0 0 Updated Feb 12, 2025
  • pori_graphkb_client Public

    Front-end web client for the GraphKB project

    bcgsc/pori_graphkb_client’s past year of commit activity
    TypeScript 9 GPL-3.0 1 14 1 Updated Feb 11, 2025
  • tr_catalog Public

    Tandem repeat catalog from public long-read sequence assemblies

    bcgsc/tr_catalog’s past year of commit activity
    Python 1 0 0 0 Updated Feb 11, 2025
  • mtGrasp Public

    mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization

    bcgsc/mtGrasp’s past year of commit activity
    Python 15 GPL-3.0 2 2 0 Updated Feb 10, 2025
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    bcgsc/btl’s past year of commit activity
    HTML 1 3 4 0 Updated Feb 10, 2025
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