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1 parent cf2395f commit 8343f1fCopy full SHA for 8343f1f
src/mavis/validate/align.py
@@ -563,7 +563,10 @@ def supports_primary_event(alignment):
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std_reads = set()
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alignments = []
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for raw_read in reads_by_query.get(contig.seq, []):
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- if raw_read.reference_name != evidence.break1.chr and raw_read.reference_name != evidence.break2.chr:
+ if (
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+ raw_read.reference_name != evidence.break1.chr
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+ and raw_read.reference_name != evidence.break2.chr
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+ ):
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continue
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read = evidence.standardize_read(raw_read)
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read.cigar = _cigar.merge_internal_events(
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