#355 fix chromosome comparison check

Author: calchoo

src/mavis/validate/align.py

@@ -563,7 +563,7 @@ def supports_primary_event(alignment):
         std_reads = set()
         alignments = []
         for raw_read in reads_by_query.get(contig.seq, []):
-            if raw_read.reference_name not in {evidence.break1.chr, evidence.break2.chr}:
+            if raw_read.reference_name != evidence.break1.chr and raw_read.reference_name != evidence.break2.chr:
                 continue
             read = evidence.standardize_read(raw_read)
             read.cigar = _cigar.merge_internal_events(