wip: fixing sync points, genotype errors, phase sets #8
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| name: Tests | |
| on: | |
| push: | |
| branches: [ "master", "dev" ] | |
| pull_request: | |
| branches: [ "master", "dev" ] | |
| jobs: | |
| Tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.ref }} | |
| - name: Install htslib | |
| run: | | |
| wget https://github.com/samtools/htslib/releases/download/1.17/htslib-1.17.tar.bz2 | |
| tar -xvf htslib-1.17.tar.bz2 | |
| cd htslib-1.17 | |
| ./configure --prefix=`pwd` | |
| make | |
| make install | |
| echo LIBRARY_PATH=`pwd`:$LIBRARY_PATH >> $GITHUB_ENV | |
| echo LD_LIBRARY_PATH=`pwd`:$LD_LIBRARY_PATH >> $GITHUB_ENV | |
| - name: Make vcfdist | |
| run: | | |
| cp -r htslib-1.17/htslib src | |
| echo $LIBRARY_PATH | |
| echo $LD_LIBRARY_PATH | |
| cd src | |
| make | |
| ./vcfdist -v | |
| - name: Test vcfdist | |
| run: | | |
| sudo apt-get install -y libgtest-dev | |
| cd tests | |
| make | |
| ./test_vcfdist |