update some comments.

STOmics · Oct 20, 2023 · d0dcb08 · d0dcb08
1 parent 53b3b75
commit d0dcb08
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diff --git a/stereo/algorithm/spatial_alignment/spatial_alignment.py b/stereo/algorithm/spatial_alignment/spatial_alignment.py
@@ -22,7 +22,7 @@ def main(
         :param initial_slice: slice to use as the initialization for center alignment, defaults to None
         :param slices: list of slices to align, defaults to None
 
-        Other parameters refer to `algorithm.paste.pairwise_align` and `algorithm.paste.center_align`
+        Other parameters refer to `algorithm.spatial_alignment.pairwise_align` and `algorithm.spatial_alignment.center_align`
         """
         if method not in ('pairwise', 'center'):
             raise ValueError(f'Error method({method}), it must be one of pairwise and center')

diff --git a/stereo/algorithm/time_series_analysis.py b/stereo/algorithm/time_series_analysis.py
@@ -31,6 +31,7 @@ def main(
             cluster_number=6
     ):
         """
+
         :param run_method: the model type when the algorithm is run, default = `tvg_marker`.
             `tvg_marker`: Calculate time variable gene based on expression of celltypes in branch
             `other`: Use fuzzy C means cluster method to cluster genes based on 1-p_value of celltypes in branch