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  1. Stereopy Stereopy Public

    A toolkit of spatial transcriptomic analysis.

    Jupyter Notebook 216 64

  2. SAW SAW Public

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  3. CellBin CellBin Public

    Tools for generating single-cell gene expression data

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  4. StereoMMv1 StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an a…

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  5. StereoSiTE StereoSiTE Public

    Spatial transcriptome analysis in python

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  • StereoSiTE Public

    Spatial transcriptome analysis in python

    STOmics/StereoSiTE’s past year of commit activity
    Jupyter Notebook 22 GPL-3.0 1 3 0 Updated Jan 26, 2025
  • cellbin2 Public

    This repository is for CellBin research group

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    Python 8 MIT 2 1 1 Updated Jan 24, 2025
  • Stereopy Public

    A toolkit of spatial transcriptomic analysis.

    STOmics/Stereopy’s past year of commit activity
    Jupyter Notebook 216 MIT 64 12 0 Updated Jan 23, 2025
  • cs-benchmark Public

    This repository is for cell segmentation benchmark

    STOmics/cs-benchmark’s past year of commit activity
    PureBasic 3 MIT 0 0 0 Updated Dec 23, 2024
  • ST-GEARS Public

    A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors

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    Jupyter Notebook 14 MIT 0 2 0 Updated Dec 10, 2024
  • CoDi Public
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    Jupyter Notebook 1 0 2 0 Updated Nov 5, 2024
  • SAW Public
    STOmics/SAW’s past year of commit activity
    HTML 151 GPL-3.0 33 49 3 Updated Sep 18, 2024
  • StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an attention mechanism.

    STOmics/StereoMMv1’s past year of commit activity
    Jupyter Notebook 30 1 1 0 Updated Aug 5, 2024
  • EAGS Public

    EAGS:efficient and adaptive Gaussian smoothing

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    Python 6 MIT 0 0 0 Updated Aug 2, 2024
  • Spatialign Public

    Spatially Resolved Transcriptomics Integration Algorithm

    STOmics/Spatialign’s past year of commit activity
    Jupyter Notebook 4 MIT 0 1 0 Updated Jul 29, 2024

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