add layer to anndata when running function stereo_to_anndata

STOmics · Nov 19, 2024 · 5c48347 · 5c48347
1 parent dfdbe6f
commit 5c48347
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/stereo/io/reader.py b/stereo/io/reader.py
@@ -957,6 +957,9 @@ def stereo_to_anndata(
             for bno, sn in data.sn.items():
                 sn_list.append([bno, sn])
         adata.uns['sn'] = pd.DataFrame(sn_list, columns=['batch', 'sn'])
+
+    for key, value in data.layers.items():
+        adata.layers[key] = deepcopy(value)
 
     for key in data.tl.key_record.keys():
         if data.tl.key_record[key]: