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我使用的是cellbin的gem,采用Gem_Reader成功读入了数据 ,想转化成anndata, 示例是下面这样写的: adata_bin200 = gem_reader.gem2anndata(200) 我查阅到binsize 默认设置的是50,请问cellbin应该怎样设置gem_reader.gem2anndata的binsize参数
Gem_Reader
adata_bin200 = gem_reader.gem2anndata(200)
The text was updated successfully, but these errors were encountered:
首先构建Gem_Reader对象的时候指定cell label列名,比如列名为“label”: gem_reader = Gem_Reader(gem_file, cell_label_key="label") 然后直接用function cellbin2anndata来转换: adata = gem_reader.cellbin2anndata()
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我使用的是cellbin的gem,采用
Gem_Reader
成功读入了数据 ,想转化成anndata,示例是下面这样写的:
adata_bin200 = gem_reader.gem2anndata(200)
我查阅到binsize 默认设置的是50,请问cellbin应该怎样设置gem_reader.gem2anndata的binsize参数
The text was updated successfully, but these errors were encountered: