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Analytical Advection in jit #1612

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Analytical Advection in jit #1612

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@erikvansebille erikvansebille commented Jul 26, 2024 •
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This PR implements a C version of the AnalyticalAdvection kernel for use with JITParticles, and thereby implements #1617

  • make unit tests work
  • confirm AnalyticalAdvection also works on spherical grids
  • Support for models that don't have grid sizes provided (e.g. missing e1v, e2u etc for ORCA grids)
  • Implement B-grid support too
  • performance-test and validate AnalyticalAdvection in real-world scenarios
  • (potentially) make AnalyticalAdvection the default kernel in Parcels; or at least encourage its use in a new 'Choosing-Advection-Kernels-tutorial' (see also Add a tutorial to help users choose an appropriate advection kernel #1549)

@erikvansebille
First attempt to create header-file for analytical advection in JIT
91fb4e0
@erikvansebille
First semi-complete C-version of analytical-advection (not working)
90e1190
@erikvansebille
Fixing customed_Cfunc_header_test to use particle_dlon
81d7c1d
@erikvansebille
Fixing small but important bug in advection computation
314493a
@erikvansebille
Using functions for computing ds and rs
760fe58
@erikvansebille
Adding support for dt<0
f48d052
@erikvansebille
Adding 3D support to analyticaladvection
6e96fe3
@erikvansebille
renaming xgrid_loc, ygrid_loc to px, py
ebd11cb
@erikvansebille
Automatic loading of library when calling AdvectionAnalytical in JIT
2a67fd1
@erikvansebille
Updating function names for future support of 2D
beb1a0a
@erikvansebille
Implementing separate 2D kernel for JIT AnalyticalAdvection
eed3422
@erikvansebille
Support for 2D JIT AnalyticalAdvection in kernel.py
1fb9de2
@erikvansebille
Merge branch 'master' into analyticaladvection_in_jit
bfab79c
@erikvansebille
FIxing timevarying flow in 2D mode
cd325b8
@erikvansebille
Setting include_dirs to inlcude application_kernels
5c03327
@erikvansebille
Fixing 2D analyticaladvection to work with and without time
1f56ec9
@erikvansebille
Adding particle.ti as function input
acba3fd
@erikvansebille
Fixing xi sampling code, and making unit test more subtle
47f50a0
@erikvansebille
Fixing calling analyticaladvection with general particle.xi
d2c27f3
@erikvansebille
Fixing small bug in jit analyticaladvection
c769886
@erikvansebille
Fixing AnalyticalAdvection Kernels to also work well for negative speeds
2bc9af3
@erikvansebille
Combining AnalyticalAdvection in 2D and 3D JIT into one C function
74b0d83
@erikvansebille
Using particle_ddepth in analyticaladvection
0edacc5
@erikvansebille
FIxing Scipy AnalyticalAdvection to add to dlon,dlat,ddepth instead o…
ff57384 
…f overwrite
@erikvansebille
Updating AnalyticalAdvection tutorial
d4c9a6a
@erikvansebille erikvansebille mentioned this pull request Jul 26, 2024
Merged
@erikvansebille erikvansebille self-assigned this Jul 26, 2024
@erikvansebille erikvansebille linked an issue Jul 26, 2024 that may be closed by this pull request
Implement AnalyticalAdvection Kernel in JIT #1617
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erikvansebille and others added 15 commits August 2, 2024 08:50
@erikvansebille
Fixing bug in backward AnalyticalAdvection where wrong cell was used
6203413
@erikvansebille
Fixing grid search bug, and increasing tolerance for grid search
e24041f
@erikvansebille
Finding correct cell for analyticaladvection in a loop
c28a4df
@erikvansebille
Adding support for time-evolving fields in cell search
8f34f69
@erikvansebille
Merge branch 'master' into analyticaladvection_in_jit
2f4cae3
@erikvansebille
Update tutorial_advection to new parcels import
317172c
@VeckoTheGecko
Merge branch 'master' into analyticaladvection_in_jit
6bbbe70
@VeckoTheGecko
Add noqa flags
0a98f39
@erikvansebille
Using NEMO cell edges (e1v, e2u etc) in calculation of fluxes
99d94b2 
This hugely improves the accuracy in e.g. a fwd-bwd run of the NEMO Gulf Stream simulation

This needs to be coded much cleaner still
@erikvansebille
Merge branch 'master' into analyticaladvection_in_jit
405cc6d
@erikvansebille
Merge branch 'analyticaladvection_in_jit' of https://github.com/Ocean…
c5fe559 
…Parcels/parcels into analyticaladvection_in_jit
@erikvansebille
Fixing analyticaladvection to expect grid sizes in Nemo format
c025d94
@erikvansebille
Updating test_advection to use nemo gridsizes for AA
2ea2c73
@erikvansebille
Merge branch 'master' into analyticaladvection_in_jit
af46e0e
@erikvansebille
Adding comment to also update Scipy AA code
a1750d5
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@erikvansebille erikvansebille mentioned this pull request Aug 29, 2024
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@michaeldenes
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@erikvansebille is 47f50a0 the commit that will fix #1689 ?

@michaeldenes
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@erikvansebille is 47f50a0 the commit that will fix #1689 ?

Looks like you already placed the fix in master! #1614

@erikvansebille erikvansebille mentioned this pull request Nov 25, 2024
Merged
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Implement AnalyticalAdvection Kernel in JIT
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@erikvansebille @michaeldenes @VeckoTheGecko