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85 Open 7 Closed
85 Open 7 Closed
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Issues list

Add attribute to indicate agreement with SemMedDB for targeted assertions incoming status - This issue has been submitted and is awaiting approval/triage
#96 opened Jul 13, 2022 by bill-baumgartner
Formalize TRAPI attribute structure for concept cooccurrence query results in progress status - This issue is actively being addressed
#93 opened Sep 17, 2021 by bill-baumgartner
Develop KGX serialization component for text-mined assertions accepted status - this issue has been approved/accepted and will will be addressed
#92 opened Aug 16, 2021 by bill-baumgartner Milestone 7, Segment II: Improve computational efficiency
@bill-baumgartner @edgargaticaCU
2
Request for Demo C: chemical-disease correlated_with edge with score to aid in ranking Demo C incoming status - This issue has been submitted and is awaiting approval/triage
#91 opened Jul 15, 2021 by bill-baumgartner
Incorporate DrugProt corpus data into training of BERT models incoming status - This issue has been submitted and is awaiting approval/triage
#90 opened Jun 28, 2021 by bill-baumgartner
Returning unexpected partial results for a two-hop query bug Something isn't working incoming status - This issue has been submitted and is awaiting approval/triage
#89 opened Jun 25, 2021 by bill-baumgartner
1
Release new KG that uses human UniProt identifiers for nodes instead of species non-specific Protein Ontology identifiers accepted status - this issue has been approved/accepted and will will be addressed
#88 opened Jun 17, 2021 by bill-baumgartner
1
Chemical -neg-reg-> EGFR not returning results accepted status - this issue has been approved/accepted and will will be addressed bug Something isn't working
#87 opened May 20, 2021 by bill-baumgartner
New association type request -- gene located_in location (anatomical entity, cell type, cellular component) enhances KG Task directly enhances an output KG in progress status - This issue is actively being addressed new association request This issue constitutes a request for a new BioLink association
#84 opened Apr 23, 2021 by bill-baumgartner
New association type request -- disease has_phenotype (has_symptom) phenotype enhances KG Task directly enhances an output KG in progress status - This issue is actively being addressed new association request This issue constitutes a request for a new BioLink association
#83 opened Apr 23, 2021 by bill-baumgartner
1
Fix Biolink categories used for Sequence Ontology concepts accepted status - this issue has been approved/accepted and will will be addressed bug Something isn't working
#82 opened Apr 13, 2021 by bill-baumgartner
@bill-baumgartner @mikebada
Mappings to abstractions in the gene/gene-product hierarchy incoming status - This issue has been submitted and is awaiting approval/triage
#81 opened Mar 30, 2021 by bill-baumgartner
1
Switch to new biolink:entity_negatively/positively_regulates_entity predicates bug Something isn't working incoming status - This issue has been submitted and is awaiting approval/triage
#80 opened Mar 30, 2021 by bill-baumgartner
Capture Tags in Pubmed Regarding Paper Type incoming status - This issue has been submitted and is awaiting approval/triage
#79 opened Feb 3, 2021 by MarkDWilliams
Proposal for EPC representation for the text-mined association KG in review status - This issue has been addressed and is now undergoing review
#78 opened Jan 13, 2021 by bill-baumgartner
@mbrush @mikebada
1
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 6 when chosen] enhances KG Task directly enhances an output KG incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2
#76 opened Dec 19, 2020 by bill-baumgartner
4 tasks
Milestone 2, Segment II: Develop new tools for extracting associations from text
Complete manual annotation of [fill in Segment II Biolink Association 6 when chosen] incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2 new association request This issue constitutes a request for a new BioLink association
#75 opened Dec 19, 2020 by bill-baumgartner Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 5 when chosen] enhances KG Task directly enhances an output KG incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2
#74 opened Dec 19, 2020 by bill-baumgartner
4 tasks
Milestone 2, Segment II: Develop new tools for extracting associations from text
Complete manual annotation of [fill in Segment II Biolink Association 5 when chosen] incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2 new association request This issue constitutes a request for a new BioLink association
#73 opened Dec 19, 2020 by bill-baumgartner Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 4 when chosen] enhances KG Task directly enhances an output KG incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2
#72 opened Dec 19, 2020 by bill-baumgartner
4 tasks
Milestone 2, Segment II: Develop new tools for extracting associations from text
Complete manual annotation of [fill in Segment II Biolink Association 4 when chosen] incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2 new association request This issue constitutes a request for a new BioLink association
#71 opened Dec 19, 2020 by bill-baumgartner Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 3 when chosen] enhances KG Task directly enhances an output KG incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2
#70 opened Dec 19, 2020 by bill-baumgartner
4 tasks
Milestone 2, Segment II: Develop new tools for extracting associations from text
Complete manual annotation of [fill in Segment II Biolink Association 3 when chosen] incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2 new association request This issue constitutes a request for a new BioLink association
#69 opened Dec 19, 2020 by bill-baumgartner Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 2 when chosen] enhances KG Task directly enhances an output KG incoming status - This issue has been submitted and is awaiting approval/triage Milestone_2 Milestone 2
#68 opened Dec 19, 2020 by bill-baumgartner
4 tasks
Milestone 2, Segment II: Develop new tools for extracting associations from text
Gene to biological process association extraction accepted status - this issue has been approved/accepted and will will be addressed Milestone_2 Milestone 2 new association request This issue constitutes a request for a new BioLink association
#67 opened Dec 19, 2020 by bill-baumgartner Milestone 2, Segment II: Develop new tools for extracting associations from text
2
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