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Issues: NCATSTranslator/Text-Mining-Provider-Roadmap
Proposal for EPC representation for the text-mined associatio...
#78
opened Jan 13, 2021 by
bill-baumgartner
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Add attribute to indicate agreement with SemMedDB for targeted assertions
incoming
status - This issue has been submitted and is awaiting approval/triage
#96
opened Jul 13, 2022 by
bill-baumgartner
Formalize TRAPI attribute structure for concept cooccurrence query results
in progress
status - This issue is actively being addressed
#93
opened Sep 17, 2021 by
bill-baumgartner
Develop KGX serialization component for text-mined assertions
accepted
status - this issue has been approved/accepted and will will be addressed
#92
opened Aug 16, 2021 by
bill-baumgartner
Milestone 7, Segment II: Improve computational efficiency
Request for Demo C: chemical-disease correlated_with edge with score to aid in ranking
Demo C
incoming
status - This issue has been submitted and is awaiting approval/triage
#91
opened Jul 15, 2021 by
bill-baumgartner
Incorporate DrugProt corpus data into training of BERT models
incoming
status - This issue has been submitted and is awaiting approval/triage
#90
opened Jun 28, 2021 by
bill-baumgartner
Returning unexpected partial results for a two-hop query
bug
Something isn't working
incoming
status - This issue has been submitted and is awaiting approval/triage
#89
opened Jun 25, 2021 by
bill-baumgartner
Release new KG that uses human UniProt identifiers for nodes instead of species non-specific Protein Ontology identifiers
accepted
status - this issue has been approved/accepted and will will be addressed
#88
opened Jun 17, 2021 by
bill-baumgartner
Chemical -neg-reg-> EGFR not returning results
accepted
status - this issue has been approved/accepted and will will be addressed
bug
Something isn't working
#87
opened May 20, 2021 by
bill-baumgartner
New association type request -- gene located_in location (anatomical entity, cell type, cellular component)
enhances KG
Task directly enhances an output KG
in progress
status - This issue is actively being addressed
new association request
This issue constitutes a request for a new BioLink association
#84
opened Apr 23, 2021 by
bill-baumgartner
New association type request -- disease has_phenotype (has_symptom) phenotype
enhances KG
Task directly enhances an output KG
in progress
status - This issue is actively being addressed
new association request
This issue constitutes a request for a new BioLink association
#83
opened Apr 23, 2021 by
bill-baumgartner
Fix Biolink categories used for Sequence Ontology concepts
accepted
status - this issue has been approved/accepted and will will be addressed
bug
Something isn't working
#82
opened Apr 13, 2021 by
bill-baumgartner
Mappings to abstractions in the gene/gene-product hierarchy
incoming
status - This issue has been submitted and is awaiting approval/triage
#81
opened Mar 30, 2021 by
bill-baumgartner
Switch to new biolink:entity_negatively/positively_regulates_entity predicates
bug
Something isn't working
incoming
status - This issue has been submitted and is awaiting approval/triage
#80
opened Mar 30, 2021 by
bill-baumgartner
Capture Tags in Pubmed Regarding Paper Type
incoming
status - This issue has been submitted and is awaiting approval/triage
#79
opened Feb 3, 2021 by
MarkDWilliams
Proposal for EPC representation for the text-mined association KG
in review
status - This issue has been addressed and is now undergoing review
#78
opened Jan 13, 2021 by
bill-baumgartner
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 6 when chosen]
enhances KG
Task directly enhances an output KG
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
#76
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
4 tasks
Complete manual annotation of [fill in Segment II Biolink Association 6 when chosen]
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
new association request
This issue constitutes a request for a new BioLink association
#75
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 5 when chosen]
enhances KG
Task directly enhances an output KG
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
#74
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
4 tasks
Complete manual annotation of [fill in Segment II Biolink Association 5 when chosen]
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
new association request
This issue constitutes a request for a new BioLink association
#73
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 4 when chosen]
enhances KG
Task directly enhances an output KG
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
#72
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
4 tasks
Complete manual annotation of [fill in Segment II Biolink Association 4 when chosen]
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
new association request
This issue constitutes a request for a new BioLink association
#71
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 3 when chosen]
enhances KG
Task directly enhances an output KG
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
#70
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
4 tasks
Complete manual annotation of [fill in Segment II Biolink Association 3 when chosen]
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
new association request
This issue constitutes a request for a new BioLink association
#69
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 2 when chosen]
enhances KG
Task directly enhances an output KG
incoming
status - This issue has been submitted and is awaiting approval/triage
Milestone_2
Milestone 2
#68
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
4 tasks
Gene to biological process association extraction
accepted
status - this issue has been approved/accepted and will will be addressed
Milestone_2
Milestone 2
new association request
This issue constitutes a request for a new BioLink association
#67
opened Dec 19, 2020 by
bill-baumgartner
Milestone 2, Segment II: Develop new tools for extracting associations from text
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