v0.5.1

QuartetNetworkGoodnessFit v0.5.1

Diff since v0.5.0

Merged pull requests:

• CompatHelper: bump compat for NLopt to 1, (keep existing compat) (#26) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat) (#27) (@github-actions[bot])
• updated references (#28) (@cecileane)

v0.5.0

QuartetNetworkGoodnessFit v0.5.0

• new feature: calculation of expected concordance factors on networks of any level,
  and under the coalescent model with possible correlated inheritance.
• requires PhyloNetworks v0.16 for accessors (e.g. getchild, getparent).

Diff since v0.4.0

Merged pull requests:

• recursive calculation of quartet CFs for general networks (#22) (@cecileane)
• bug fix in expected qCF calculation (#23) (@cecileane)
• bump compat for PhyloNetworks to 0.16, drop earlier (#25) (@cecileane)

v0.4.0

QuartetNetworkGoodnessFit v0.4.0

Diff since v0.3.4

Merged pull requests:

• switch simulator: use PhyloCoalSimulations instead of HybridLambda (#21) (@cecileane)

v0.3.4

QuartetNetworkGoodnessFit v0.3.4

Diff since v0.3.3

Merged pull requests:

• CompatHelper: bump compat for StatsFuns to 1, (keep existing compat) (#19) (@github-actions[bot])
• CompatHelper: bump compat for PhyloNetworks to 0.15, (keep existing compat) (#20) (@github-actions[bot])

v0.3.3

QuartetNetworkGoodnessFit v0.3.3

Diff since v0.3.2

compat: julia v1.7, CSV 0.10, SpecialFunctions 2

Merged pull requests:

• CompatHelper: bump compat for SpecialFunctions to 2, (keep existing compat) (#16) (@github-actions[bot])
• CompatHelper: bump compat for CSV to 0.10, (keep existing compat) (#17) (@github-actions[bot])

v0.3.2

QuartetNetworkGoodnessFit v0.3.2

Diff since v0.3.1

Merged pull requests:

• CompatHelper: bump compat for CSV to 0.9, (keep existing compat) (#14) (@github-actions[bot])
• fix gh action build for documentation (#15) (@cecileane)

v0.3.1

QuartetNetworkGoodnessFit v0.3.1

Diff since v0.3.0

support for: julia 1.6, PhyloNetworks 0.14, DataFrames 1.0

Merged pull requests:

• CompatHelper: bump compat for "PhyloNetworks" to "0.13" (#12) (@github-actions[bot])
• for v0.3.1: support for julia v1.6, DataFrames v1.0, etc. (#13) (@github-actions[bot])

v0.3.0

QuartetNetworkGoodnessFit v0.3.0

Diff since v0.2.1

• compatible with julia v1.5
• based on simulator hybrid-Lambda v0.6.3-beta (warning if the simulated z's are far from 0)
• bug fix if branch lengths are optimized: non-lenient tolerance and expected CFs updated kept in sync
• better ultrametrization of a network with missing branch lengths, including bug fix when both partner edges lack a length

Merged pull requests:

• ultrametrize when both partners lack a length; julia 1.5 (#7) (@cecileane)
• CompatHelper: bump compat for "DataFrames" to "0.22" (#8) (@github-actions[bot])
• CompatHelper: bump compat for "CSV" to "0.8" (#9) (@github-actions[bot])
• CompatHelper: bump compat for "SpecialFunctions" to "1.0" (#10) (@github-actions[bot])

v0.2.1

QuartetNetworkGoodnessFit v0.2.1

Diff since v0.2.0

Merged pull requests:

• CompatHelper: bump compat for "DataFrames" to "0.21" (#4) (@github-actions[bot])
• CompatHelper: bump compat for "NLopt" to "0.6" (#5) (@github-actions[bot])
• CompatHelper: bump compat for "CSV" to "0.7" (#6) (@github-actions[bot])

v0.2.0

QuartetNetworkGoodnessFit v0.2.0

Diff since v0.1.0

new features:

• simulation-based correction for dependence
• hybrid-lambda dependency

bug fix: ultrametrize network along major tree, for hybrid-lambda simulator