up dependencies: DataFrames v0.12 and CSV v0.7 (#4)

thanks CompatHelper and github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>!

Project.toml

@@ -1,7 +1,7 @@
 name = "QuartetNetworkGoodnessFit"
 uuid = "1382f7fc-2744-4d9d-8ec6-1e3efdec0746"
 authors = ["Cecile Ane <[email protected]>"]
-version = "0.2.0"
+version = "0.2.1"
 
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
@@ -18,9 +18,9 @@ StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
 
 [compat]
 CSV = "0.4, 0.5, 0.6, 0.7"
-DataFrames = "0.13, 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20"
+DataFrames = "0.13, 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, 0.21"
 NLopt = "0.5.1, 0.6"
-PhyloNetworks = "0.11"
+PhyloNetworks = "0.11, 0.12"
 SpecialFunctions = "0.8, 0.9, 0.10"
 StatsFuns = "0.7, 0.8, 0.9"
 julia = "1.2, 1.3, 1.4"

docs/Project.toml

@@ -1,8 +1,11 @@
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 DocumenterMarkdown = "997ab1e6-3595-5248-9280-8efb232c3433"
 PhyloNetworks = "33ad39ac-ed31-50eb-9b15-43d0656eaa72"
 
 [compat]
+CSV = "0.7"
+DataFrames = "0.21"
 Documenter = "~0.24"

docs/src/man/gof.md

@@ -12,8 +12,8 @@ for each of the 3 topologies on these 4 taxa, that is, the
 proportion of genes estimated to have each 4-taxon unrooted topology.
 
 ```@repl gof
-using QuartetNetworkGoodnessFit, CSV
-qCF = CSV.read(joinpath(dirname(pathof(QuartetNetworkGoodnessFit)), "..","test","example_qCF_5taxa.csv"));
+using QuartetNetworkGoodnessFit, DataFrames, CSV
+qCF = DataFrame!(CSV.File(joinpath(dirname(pathof(QuartetNetworkGoodnessFit)), "..","test","example_qCF_5taxa.csv")));
 qCF
 ```
 

test/Project.toml

@@ -1,5 +1,10 @@
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 PhyloNetworks = "33ad39ac-ed31-50eb-9b15-43d0656eaa72"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[compat]
+CSV = "0.7"
+DataFrames = "0.21"

test/runtests.jl

@@ -1,5 +1,5 @@
 using QuartetNetworkGoodnessFit
-using CSV
+using DataFrames, CSV
 using PhyloNetworks
 using Test
 using Distributed

test/test_qnetGoF.jl

@@ -1,6 +1,6 @@
 @testset "testing GoF, multinomial distribution" begin
 
-df = CSV.read(joinpath(dirname(Base.find_package("PhyloNetworks")),"..","examples","buckyCF.csv"))
+df = DataFrame!(CSV.File(joinpath(dirname(Base.find_package("PhyloNetworks")),"..","examples","buckyCF.csv")))
 d0 = readTableCF(df)
 d = deepcopy(d0)
 net3 = readTopology("((((D:0.4,C:0.4):4.8,((A:0.8,B:0.8):2.2)#H1:2.2::0.7):4.0,(#H1:0::0.3,E:3.0):6.2):2.0,O:11.2);");

test/test_ticr.jl

@@ -1,7 +1,7 @@
 @testset "testing TICR, Dirichlet distribution" begin
 # previously in PhyloNetworks
 
-df = CSV.read(joinpath(dirname(Base.find_package("PhyloNetworks")),"..","examples","buckyCF.csv"));
+df = DataFrame!(CSV.File(joinpath(dirname(Base.find_package("PhyloNetworks")),"..","examples","buckyCF.csv")));
 d = readTableCF(df);
 
 @testset "ticr! on data frame, tree" begin