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{{$NEXT}} | ||
# Release 1.15.3 2018-08-29 22:34:53 UTC | ||
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## Minor improvements | ||
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--- | ||
layout: post | ||
title: JBrowse 1.15.3 maintenance release | ||
date: 2018-08-29 | ||
tags: ["News","Software releases"] | ||
--- | ||
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JBrowse 1.15.3 has been released! This contains an bugfix introduced in 1.15.0 where typing a reference sequence name in the search bar did not navigate to it properly. | ||
It also contains a cool feature where "ultra minimal configs" can be specified by simply specifying a track label and urlTemplate | ||
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For example, a directory containing indexed files like VCF, BAM, GFF3 tabix, and indexed FASTA can have a config simply like this in tracks.conf | ||
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``` | ||
[GENERAL] | ||
refSeqs=volvox.fa.fai | ||
[tracks.refseq] | ||
urlTemplate=volvox.fa | ||
[tracks.bam] | ||
urlTemplate=volvox-sorted.bam | ||
[tracks.cram] | ||
urlTemplate=volvox-sorted.cram | ||
[tracks.vcf] | ||
urlTemplate=volvox.filtered.vcf.gz | ||
[tracks.gff] | ||
urlTemplate=volvox.sort.gff3.gz | ||
[tracks.bed] | ||
urlTemplate=volvox.sort.bed.gz | ||
``` | ||
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Enjoy browsing! | ||
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* [JBrowse-1.15.3.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3.zip) - minified release | ||
* [JBrowse-1.15.3-dev.zip](https://github.com/GMOD/jbrowse/archive/1.15.3-release.zip) - use this if you modify jbrowse source code or use plugins | ||
* [JBrowse-1.15.3-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3-desktop-win32-x64.zip) | ||
* [JBrowse-1.15.3-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3-desktop-linux-x64.zip) | ||
* [JBrowse-1.15.3-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3-desktop-darwin-x64.zip) | ||
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## Minor improvements | ||
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* Add ability to automatically deduce the storeClass and trackType of files based on | ||
the file extension of urlTemplate. This allows very minimal configs where only | ||
track label and urlTemplate can be specified. (<a href="https://github.com/gmod/jbrowse/pull/1189">issue #1189</a>, <a href="https://github.com/cmdcolin">@cmdcolin</a>) | ||
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## Bug fixes | ||
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* Fixed an issue with servers that use HTTP Basic Authentication on certain browsers, | ||
notably some Chromium, Firefox 60 and earlier, and Safari. Thanks to Keiran Raine | ||
for reporting and <a href="https://github.com/cmdcolin">@cmdcolin</a> for debugging. (<a href="https://github.com/gmod/jbrowse/issues/1186">issue #1186</a>, <a href="https://github.com/rbuels">@rbuels</a>) | ||
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* Fix issue where searching for reference sequence names would not be navigate to the | ||
typed in reference sequence (<a href="https://github.com/gmod/jbrowse/issues/1193">issue #1193</a>, <a href="https://github.com/cmdcolin">@cmdcolin</a>) | ||
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