cmdcolin

Follow

Colin Diesh cmdcolin

Follow

257 followers · 280 following

Achievements

Achievements

Pinned Loading

GMOD/jbrowse-components Public

Source code for JBrowse 2, a modern React-based genome browser

TypeScript 234 67
oddgenes Public

A small database of weird gene annotations

Raku 202 12
awesome-genome-visualization Public

A list of interesting genome browser and genome visualization programs

TypeScript 945 119
graphgenomeviewer Public

Web based viewer for small to medium GFA format files, similar to Bandage

TypeScript 11 1

4,098 contributions in the last year

Learn how we count contributions

Less

More

Activity overview

Contributed to GMOD/jbrowse-components, cmdcolin/cmdcolin.github.io, cmdcolin/awesome-genome-visualization and 205 other repositories

Contribution activity

April 2025

Created 217 commits in 35 repositories

Created 5 repositories

cmdcolin/bed2gff Rust
This contribution was made on Apr 15
cmdcolin/celegans_jb2_demo
This contribution was made on Apr 14
cmdcolin/figgyprot TypeScript
This contribution was made on Apr 8
cmdcolin/doSameSpeciesLiftOver_nextflow Nextflow
This contribution was made on Apr 8
cmdcolin/obographer TypeScript
This contribution was made on Apr 6

Created a pull request in GMOD/bbi-js that received 3 comments

RangeError accessing particular file

This PR doesn't yet fix bug but just reports a finding that a particular BigBed file produces a RangeError found while doing ucsc2jbrowse conversions

+590 −502 lines changed • 3 comments

Opened 21 other pull requests in 5 repositories

GMOD/jbrowse-components 14 merged 3 open

Minor optimizations in multi-sample variant rendering
This contribution was made on Apr 22
Add basic cytoband for Drosophila
This contribution was made on Apr 22
Support cytoband bed files starting with "#"
This contribution was made on Apr 22
Dynamically toggle wheel-scroll normalization to improve touchpad pinch-to-zoom usage
This contribution was made on Apr 21
Avoid aggregating bigbed features with geneName === 'none'
This contribution was made on Apr 21
Fix theme augmentation for primary/secondary colors in v3.3.0
This contribution was made on Apr 21
Add ability to connect to genark and UCSC browsers to jbrowse desktop
This contribution was made on Apr 20
Avoid decoding entire read sequence to enable rendering very large assembly-to-assemly BAM features
This contribution was made on Apr 19
Add simplified display of REF/ALT to help with long strings produced by e.g. Cactus VCF
This contribution was made on Apr 17
Add genotype frequency table to variant feature details
This contribution was made on Apr 16
Add 'genotype' column to the Variant sample grid
This contribution was made on Apr 15
Add ability to use jexl filters on multi-sample variant displays
This contribution was made on Apr 15
Controlling navigation of embedded component - storybook examples
This contribution was made on Apr 14
v3.3.0 release announcement
This contribution was made on Apr 11
Show ALT allele description on multi-variant mouseover
This contribution was made on Apr 10
Make the 'regular' multi-variant display mode render SVs instead of making it a specialized display mode
This contribution was made on Apr 4
Proposal: Vendor mobx-state-tree
This contribution was made on Apr 4

GMOD/vcf-js 1 open

Don't replace . with undefined
This contribution was made on Apr 16

alejandrogzi/bed2gff 1 merged

Use a combination key of gene name + chromosome name for creating a gene line
This contribution was made on Apr 15

photocyte/doSameSpeciesLiftOver_nextflow 1 open

Small link fix
This contribution was made on Apr 8

GMOD/2025-biocuration-tutorial 1 merged

Add sample data files from CaeNDR
This contribution was made on Apr 4

Reviewed 1 pull request in 1 repository

GMOD/jbrowse-components 1 pull request

Add simplified display of REF/ALT to help with long strings produced by e.g. Cactus VCF
This contribution was made on Apr 17

Created an issue in mui/mui-x that received 15 comments

[data grid][docs] CSS loader needed for x-data-grid v8.0.0?

Related page https://mui.com/blog/mui-x-v8/ Kind of issue Unclear explanations Issue description I saw that between v8.0.0-beta.3 and v8.0.0 of x-d…

15 comments

Opened 15 other issues in 8 repositories

GMOD/jbrowse-components 4 open 4 closed

Consider exposing "cache" fetch parameter
This contribution was made on Apr 21
Improve pinch to zoom gesture
This contribution was made on Apr 19
@jbrowse/img broken in v3.3.0
This contribution was made on Apr 19
CRAv5 and farm embedded demos not working
This contribution was made on Apr 18
Canonicalize refNames in search results
This contribution was made on Apr 17
Z-index issue
This contribution was made on Apr 14
"TypeError: Content-Length header of network response exceeds response Body."
This contribution was made on Apr 7
Remove server side rendering of react components
This contribution was made on Apr 4

cmdcolin/jb2hubs 1 open

exoniphy error
This contribution was made on Apr 21

cmdcolin/ucsc2jbrowse 1 open

"Link" tables for more gene metadata
This contribution was made on Apr 18

GMOD/vcf-js 1 open

Review usage of INFO.END
This contribution was made on Apr 16

jcoreio/material-ui-popup-state 1 open

If popup has a scrollbar, difficult to access subMenus
This contribution was made on Apr 16

dmayfieldjones/dmayfieldjones.github.io 1 open

SSL certificate broken
This contribution was made on Apr 10

CindyJS/CindyJS 1 closed

Website: changing WebGL select box produces error
This contribution was made on Apr 4

kyleLesack/sv_analysis_cendr_pacbio 1 closed

Do you happen to have VCF for the SV calls?
This contribution was made on Apr 3

Started 1 discussion in 1 repository

GMOD/jbrowse-components

Release v3.3.0
This contribution was made on Apr 18

Answered 2 discussions in 1 repository

GMOD/jbrowse-components

How to sync jbrowse scale with external scale
This contribution was made on Apr 19
Issue loading IndexedFastaAdapter from Azure Blob Storage using SAS links
This contribution was made on Apr 17