[skip ci] Updates

GMOD · Oct 31, 2023 · 9831c08 · 9831c08
1 parent e01bbcb
commit 9831c08
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Showing 2 changed files with 10 additions and 2 deletions.
diff --git a/packages/core/pluggableElementTypes/models/components/SaveTrackData.tsx b/packages/core/pluggableElementTypes/models/components/SaveTrackData.tsx
@@ -15,7 +15,7 @@ import { IAnyStateTreeNode } from 'mobx-state-tree'
 import { makeStyles } from 'tss-react/mui'
 import { saveAs } from 'file-saver'
 import { observer } from 'mobx-react'
-import { Dialog, ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui'
+import { Dialog, ErrorMessage } from '@jbrowse/core/ui'
 import {
   getSession,
   getContainingView,

diff --git a/plugins/variants/src/VariantTrack/saveTrackFormats/vcf.ts b/plugins/variants/src/VariantTrack/saveTrackFormats/vcf.ts
@@ -1,9 +1,17 @@
 import { Feature } from '@jbrowse/core/util'
 
+function generateINFO(feature: Feature) {
+  return Object.entries(feature.get('INFO'))
+    .map(([key, value]) => `${key}=${value}`)
+    .join(';')
+}
 export function stringifyVCF({ features }: { features: Feature[] }) {
+  const fields = ['refName', 'start', 'name', 'REF', 'ALT', 'QUAL', 'FILTER']
   return features
     .map(feature => {
-      return `hello ${feature.get('name')}`
+      return `${fields
+        .map(field => feature.get(field) || '.')
+        .join('\t')}\t${generateINFO(feature)}`
     })
     .join('\n')
 }