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Fixes for micromamba installs #24

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merged 1 commit into from
Nov 5, 2024
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mathomp4
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Recently, there have been weird issues seen with GEOSpyD installs by @JulesKouatchou.

Setting MAMBA_ROOT_PREFIX seems to help, but testing is ongoing.

@mathomp4 mathomp4 added bug Something isn't working enhancement New feature or request labels Oct 15, 2024
@mathomp4 mathomp4 self-assigned this Oct 15, 2024
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coderabbitai bot commented Oct 15, 2024

Walkthrough

The pull request includes updates to the CHANGELOG.md and install_miniforge.bash files. The CHANGELOG.md reflects a fix for micromamba behaviors and updates the example Miniconda version to 24.7.1-2. The install_miniforge.bash script modifies the Miniforge version from 24.7.1-0 to 24.7.1-2 and adds configuration settings for use_lockfiles: False in both .mambarc and .condarc files.

Changes

File Change Summary
CHANGELOG.md Updated with a fix for micromamba behaviors and changed example Miniconda version to 24.7.1-2. No additions or removals.
install_miniforge.bash Updated Miniforge version from 24.7.1-0 to 24.7.1-2. Added use_lockfiles: False to temporary .mambarc and .condarc files.

Possibly related PRs

  • Migrate to Miniforge #22: The changes in CHANGELOG.md and install_miniforge.bash both involve updates related to the transition from Miniconda to Miniforge, including version updates and configuration adjustments that align with the main PR's focus on micromamba behaviors and version references.

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Actionable comments posted: 1

🧹 Outside diff range and nitpick comments (1)
CHANGELOG.md (1)

12-14: LGTM! Consider minor formatting adjustment.

The fixes for micromamba behaviors are well-documented and align with the PR objectives. These changes should help address the reported installation issues.

For consistency with the Keep a Changelog format, consider adjusting the indentation of the list items:

 - Fix for new odd `micromamba` behaviors
-  - Set `MAMBA_ROOT_PREFIX`
-  - Set `use_lockfiles: False` in `.mambarc`
+   - Set `MAMBA_ROOT_PREFIX`
+   - Set `use_lockfiles: False` in `.mambarc`
🧰 Tools
🪛 LanguageTool

[duplication] ~13-~13: Possible typo: you repeated a word
Context: ... for new odd micromamba behaviors - Set MAMBA_ROOT_PREFIX - Set use_lockfiles: False in .mambarc #...

(ENGLISH_WORD_REPEAT_RULE)

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between d807a3a and 478416b.

📒 Files selected for processing (2)
  • CHANGELOG.md (1 hunks)
  • install_miniforge.bash (4 hunks)
🧰 Additional context used
🪛 LanguageTool
CHANGELOG.md

[duplication] ~13-~13: Possible typo: you repeated a word
Context: ... for new odd micromamba behaviors - Set MAMBA_ROOT_PREFIX - Set use_lockfiles: False in .mambarc #...

(ENGLISH_WORD_REPEAT_RULE)

🔇 Additional comments (7)
CHANGELOG.md (2)

Line range hint 20-26: LGTM! Empty sections maintained for clarity.

The inclusion of empty "Added", "Removed", and "Deprecated" sections is a good practice. It maintains the structure of the changelog and clearly indicates that no changes were made in these categories.

🧰 Tools
🪛 LanguageTool

[duplication] ~13-~13: Possible typo: you repeated a word
Context: ... for new odd micromamba behaviors - Set MAMBA_ROOT_PREFIX - Set use_lockfiles: False in .mambarc #...

(ENGLISH_WORD_REPEAT_RULE)


Line range hint 1-26: Overall changes align well with PR objectives.

The changelog updates effectively document the fixes for micromamba behaviors and the version update, which align well with the PR objectives of addressing GEOSpyD installation issues. The changes are clear and provide good context for the modifications made in this pull request.

🧰 Tools
🪛 LanguageTool

[duplication] ~13-~13: Possible typo: you repeated a word
Context: ... for new odd micromamba behaviors - Set MAMBA_ROOT_PREFIX - Set use_lockfiles: False in .mambarc #...

(ENGLISH_WORD_REPEAT_RULE)

install_miniforge.bash (5)

76-76: LGTM: Version update for EXAMPLE_MINI_VERSION

The update from "24.7.1-0" to "24.7.1-2" for the EXAMPLE_MINI_VERSION variable is appropriate. This minor version update likely includes bug fixes or small improvements, which aligns with the PR objective to address recent installation issues.


431-431: LGTM: Added use_lockfiles configuration to .condarc

The addition of use_lockfiles: False to the .condarc configuration is consistent with the change made to .mambarc. This ensures that both mamba and conda configurations are aligned, which is a good practice for maintaining consistency in the environment management.


Line range hint 1-867: Summary: Improvements to Miniforge installation process

The changes made to install_miniforge.bash are well-aligned with the PR objectives to address recent issues with GEOSpyD installations. The updates include:

  1. Updating the Miniforge version
  2. Disabling lock files for both mamba and conda
  3. Setting the MAMBA_ROOT_PREFIX

These modifications should help improve the installation process and resolve some of the reported issues. The changes are consistent and well-implemented throughout the script.


421-421: LGTM: Added use_lockfiles configuration to .mambarc

The addition of use_lockfiles: False to the .mambarc configuration is appropriate. This change can help speed up installations, which may address some of the reported issues. However, be aware that disabling lock files might reduce consistency across different environments.

To ensure this change doesn't introduce unexpected behavior, consider running the following verification script:


443-444: LGTM: Added MAMBA_ROOT_PREFIX export

The addition of export MAMBA_ROOT_PREFIX=$MINIFORGE_INSTALLDIR is a good practice. This ensures that mamba uses the correct installation directory, which can help prevent issues related to conflicting installations or incorrect path references. This change aligns well with the PR objectives to address installation issues.

To ensure this change is effective, consider running the following verification script:

CHANGELOG.md Show resolved Hide resolved
@mathomp4 mathomp4 merged commit d28348b into main Nov 5, 2024
4 checks passed
@mathomp4 mathomp4 deleted the bugfix/mathomp4/micromamba-issue branch November 5, 2024 19:12
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