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Add h5netcdf, update example to Miniforge 24.11.2-1 #27

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Add h5netcdf, update example to Miniforge 24.11.2-1 #27

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@mathomp4 mathomp4 commented Jan 7, 2025

This PR has the latest updates from testing which include:

  1. Update the example Miniforge version to 24.11.2-1
  2. Add h5netcdf as a new Mamba package
  3. Fix some bugs with the mamba list calls at the end of the script

@mathomp4
Add h5netcdf, update example to Miniforge 24.11.2-1
5611811 
This PR has the latest updates from testing which include:

1. Update the example Miniforge version to 24.11.2-1
2. Add `h5netcdf` as a new Mamba package
3. Fix some bugs with the `mamba list` calls at the end of the script
@mathomp4 mathomp4 added enhancement New feature or request add package Request to add package labels Jan 7, 2025
@mathomp4 mathomp4 self-assigned this Jan 7, 2025
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coderabbitai bot commented Jan 7, 2025 •
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Walkthrough

This pull request updates the Miniforge installation script and changelog with version and package management modifications. The changes primarily involve updating the Miniforge version from 24.9.2-0 to 24.11.2-1, restructuring the environment directory configuration, and adding new packages like h5netcdf to the installation process. The modifications aim to improve the clarity and specificity of the installation script while keeping the overall structure consistent.

Changes

File Change Summary
CHANGELOG.md - Updated "Fixed" section with mamba list command fix
- Updated example Miniforge version to 24.11.2-1
- Added h5netcdf to "Added" section
install_miniforge.bash - Updated EXAMPLE_MINI_VERSION to 24.11.2-1
- Introduced MINIFORGE_ENVNAME variable
- Modified environment directory construction
- Added pip and pipenv to mamba package installation
- Separated numpy, scipy, numba package installations
- Added h5netcdf to package list
- Updated mamba list commands to specify environment name

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bug

📜 Recent review details

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📥 Commits

Reviewing files that changed from the base of the PR and between 3a4188b and 5611811.

📒 Files selected for processing (2)
  • CHANGELOG.md (1 hunks)
  • install_miniforge.bash (4 hunks)
🔇 Additional comments (7)
CHANGELOG.md (3)

15-15: LGTM: Fix for mamba list issues documented.

The changelog correctly documents the fix for mamba list issues, which corresponds to the changes in install_miniforge.bash where the -n flag is added to specify the environment name.

19-19: LGTM: Version update documented.

The changelog correctly documents the Miniforge version update to 24.11.2-1, which matches the EXAMPLE_MINI_VERSION update in install_miniforge.bash.

24-26: LGTM: New package addition documented.

The changelog correctly documents the addition of the h5netcdf package, which matches the package installation in install_miniforge.bash.

install_miniforge.bash (4)

76-76: LGTM: Version update.

The Miniforge version update to 24.11.2-1 matches the changelog entry.

372-373: LGTM: Environment name variable extraction.

Good refactoring to extract MINIFORGE_ENVNAME into a separate variable, improving code maintainability and reusability.

544-549: LGTM: Package installation improvements.

Good changes:

  1. Split numpy/scipy/numba installations for better dependency management
  2. Added h5netcdf package as documented in changelog

738-739: LGTM: Fixed mamba list commands.

The mamba list commands now correctly use the -n flag with MINIFORGE_ENVNAME, fixing the issues mentioned in the changelog.

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