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Added spatio-temporal scale #1576

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Added spatio-temporal scale #1576

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5a94173
Added spatio-temporal scale
timalamenciak Dec 12, 2024
d6df28b
Removed scale under qualitative and added under PATO age and size
timalamenciak Dec 16, 2024
b0d70b4
Merge branch 'EnvironmentOntology:master' into issue-1569
timalamenciak Feb 3, 2025
b3cd75f
Added landscape size and age scales revised according to feedback fro…
timalamenciak Feb 4, 2025
0370d3e
Added landscape scale and age with revisions from PL & CM
timalamenciak Feb 4, 2025
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58 changes: 57 additions & 1 deletion src/envo/envo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -4136,6 +4136,11 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605007>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605008>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605009>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620002>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620003>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620004>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620005>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000002>))
Expand Down Expand Up @@ -11159,9 +11164,9 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000424> <http://purl.obolibrar
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Ocean_floor>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "MA:ma") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_00000426> "A marine bed which lies below an ocean.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_00000426> "FTT:1020")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean bed")
AnnotationAssertion(Annotation(rdfs:comment "When \"ocean basin\" is used in a hydrological sense, then \"ocean basin floor\" is any floor under seawater. In ENVO, the class \"ocean basin\" is used in a geological sense, which does not include all areas of ocean floor.") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean basin floor")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ADL:FTT") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean floor feature")
AnnotationAssertion(Annotation(rdfs:comment "Seas are smaller than oceans and are usually located where the land and ocean meet. However, these two terms are often used interchangeably."@en) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "seafloor"@en)
AnnotationAssertion(Annotation(rdfs:comment "When \"ocean basin\" is used in a hydrological sense, then \"ocean basin floor\" is any floor under seawater. In ENVO, the class \"ocean basin\" is used in a geological sense, which does not include all areas of ocean floor.") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean basin floor")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean floor")
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000426> <http://purl.obolibrary.org/obo/ENVO_01001378>)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000426> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/ENVO_00002450>))
Expand Down Expand Up @@ -46308,6 +46313,52 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620000> "biogeographic realm"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620000> <http://purl.obolibrary.org/obo/ENVO_01000254>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620001> (scale)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620001> "A descriptive quality of the spatio-temporal level at which a geographical phenomenon occurs.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620001> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620001> "2024-12-12T14:47:19Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_03620001> "resolution")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#source> <http://purl.obolibrary.org/obo/ENVO_03620001> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620001> "scale"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620001> <http://purl.obolibrary.org/obo/PATO_0000068>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620002> (micro-scale)
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620002> "A spatiotemporal scale that describes phenomenon between 0 m2 and 1,000,000 m2; concerning 1 to 500 years in time.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/ENVO_03620002> "https://doi.org/10.1007/BF00138906")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620002> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620002> "2024-12-12T14:51:06Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620002> "micro-scale"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620002> <http://purl.obolibrary.org/obo/ENVO_03620001>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620003> (meso-scale)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620003> "A spatiotemporal scale that describes phenomenon between 1,000,000 m2 and 10,000,000,000 m2; concerning 500 to 10,000 years in time.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/ENVO_03620003> "https://doi.org/10.1007/BF00138906")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620003> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620003> "2024-12-12T14:51:06Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620003> "meso-scale"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620003> <http://purl.obolibrary.org/obo/ENVO_03620001>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620004> (macro-scale)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620004> "A spatiotemporal scale that describes phenomenon between 10,000,000,000 m2 and 1,000,000,000,000 m2; concerning 10,000 to 1,000,000 years in time.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/ENVO_03620004> "https://doi.org/10.1007/BF00138906")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620004> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620004> "2024-12-12T14:51:06Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620004> "macro-scale"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620004> <http://purl.obolibrary.org/obo/ENVO_03620001>)

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# Class: <http://purl.obolibrary.org/obo/ENVO_03620005> (mega-scale)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620005> "A spatiotemporal scale that describes phenomenon at 1,000,000,000,000 m2 or greater; concerning 1,000,000 years in time or greater.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/ENVO_03620005> "https://doi.org/10.1007/BF00138906")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620005> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620005> "2024-12-12T14:51:06Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620005> "mega-scale"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620005> <http://purl.obolibrary.org/obo/ENVO_03620001>)

# Class: <http://purl.obolibrary.org/obo/ENVO_04000000> (adfreezing)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://www.merriam-webster.com/dictionary/adfreezing") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_04000000> "Adfreezing is a freezing process during which two objects adhere to each other via ice.")
Expand Down Expand Up @@ -48367,6 +48418,10 @@ SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000967> <http://purl.obolibrary.

SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000968> <http://purl.obolibrary.org/obo/ENVO_00003074>)

# Class: <http://purl.obolibrary.org/obo/PATO_0000068> (qualitative)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0000068> "A quality of an entity that is descriptive or observational, typically not represented numerically.")


############################
# Named Individuals
Expand Down Expand Up @@ -48880,6 +48935,7 @@ ClassAssertion(<http://purl.obolibrary.org/obo/ENVO_00000015> <https://www.wikid
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <https://www.wikidata.org/wiki/Q715269> <https://www.wikidata.org/wiki/Q2>)


DisjointClasses(<http://purl.obolibrary.org/obo/ENVO_03620002> <http://purl.obolibrary.org/obo/ENVO_03620003> <http://purl.obolibrary.org/obo/ENVO_03620004> <http://purl.obolibrary.org/obo/ENVO_03620005>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_53243> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_53550> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_60034> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
Expand Down
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