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Added spatio-temporal scale #1576

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Added spatio-temporal scale #1576

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5a94173
Added spatio-temporal scale
timalamenciak Dec 12, 2024
d6df28b
Removed scale under qualitative and added under PATO age and size
timalamenciak Dec 16, 2024
b0d70b4
Merge branch 'EnvironmentOntology:master' into issue-1569
timalamenciak Feb 3, 2025
b3cd75f
Added landscape size and age scales revised according to feedback fro…
timalamenciak Feb 4, 2025
0370d3e
Added landscape scale and age with revisions from PL & CM
timalamenciak Feb 4, 2025
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108 changes: 107 additions & 1 deletion src/envo/envo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -4139,6 +4139,22 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605007>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605008>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605009>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620002>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620003>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620004>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620005>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620006>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620007>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620008>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620010>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620011>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620012>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620013>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620014>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620015>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620016>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620017>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000002>))
Expand Down Expand Up @@ -4335,6 +4351,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000323>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000963>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001351>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001360>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001486>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001576>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001595>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001657>))
Expand Down Expand Up @@ -14259,9 +14276,9 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00002149> <http://purl.obolibrar

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_00002150> "Coastal sea water is sea water that is adjacent to a coast.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/ENVO_00002150> "coastal water")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_00002150> "coastal seawater")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00002150> "coastal ocean water")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00002150> "coastal oceanic water")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_00002150> "coastal seawater")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_00002150> <http://purl.obolibrary.org/obo/envo#envoPolar>)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_00002150> "The limits of what qualifies as \"adjacent to\" vary greatly. This should be defined on a data level and is left intentionally fuzzy here. The label is \"coastal sea water\" rather than \"coastal water\" as some large lakes are often said to have coasts.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00002150> "coastal sea water")
Expand Down Expand Up @@ -46412,6 +46429,78 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620000> "biogeographic realm"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620000> <http://purl.obolibrary.org/obo/ENVO_01000254>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620001> (landscape macroscale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620001> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 10,000 and 1,000,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620001> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620001> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620001> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620001> "landscape macroscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620001> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620002> (landscape megascale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") Annotation(rdfs:comment "https://en.wikipedia.org/wiki/Scale_(geography)") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620002> "Chronological age which inheres in a bearer by virtue of that bearer existing for more than 1,000,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620002> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620002> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620002> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620002> "landscape megascale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620002> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620003> (landscape mesoscale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620003> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 500 and 10,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620003> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620003> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620003> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620003> "landscape mesoscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620003> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620004> (landscape microscale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620004> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 1 and 500 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620004> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620004> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620004> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620004> "landscape microscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620004> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620005> (landscape microscale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620005> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 1 and 10e6 square metres.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620005> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620005> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620005> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620005> "landscape microscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620005> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620006> (landscape mesoscale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620006> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 10e6 and 10e10 square metres.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620006> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620006> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620006> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620006> "landscape mesoscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620006> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620007> (landscape macroscale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620007> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 10e10 and 10e12 square metres.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620007> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620007> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620007> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620007> "landscape macroscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620007> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620008> (landscape megascale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620008> "An area quality which inheres in a bearer by virtue of that bearer having an area of greater than 10e12 square meters.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620008> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620008> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620008> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620008> "landscape megascale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620008> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_04000000> (adfreezing)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://www.merriam-webster.com/dictionary/adfreezing") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_04000000> "Adfreezing is a freezing process during which two objects adhere to each other via ice.")
Expand Down Expand Up @@ -48471,6 +48560,20 @@ SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000967> <http://purl.obolibrary.

SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000968> <http://purl.obolibrary.org/obo/ENVO_00003074>)

# Class: <http://purl.obolibrary.org/obo/PATO_0002057> (increased area)


# Class: <http://purl.obolibrary.org/obo/PATO_0002058> (decreased area)


# Class: <http://purl.obolibrary.org/obo/PATO_0045051> (normal area)

# Class: <http://purl.obolibrary.org/obo/PATO_0001486> (chronological age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0001486> "An age quality that exists by virtue of the time (years and months) that the bearer has existed.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0001486> "chronological age")
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0001486> <http://purl.obolibrary.org/obo/PATO_0000011>)


############################
# Named Individuals
Expand Down Expand Up @@ -48984,6 +49087,8 @@ ClassAssertion(<http://purl.obolibrary.org/obo/ENVO_00000015> <https://www.wikid
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <https://www.wikidata.org/wiki/Q715269> <https://www.wikidata.org/wiki/Q2>)


DisjointClasses(<http://purl.obolibrary.org/obo/ENVO_03620001> <http://purl.obolibrary.org/obo/ENVO_03620002> <http://purl.obolibrary.org/obo/ENVO_03620003> <http://purl.obolibrary.org/obo/ENVO_03620004>)
DisjointClasses(<http://purl.obolibrary.org/obo/ENVO_03620005> <http://purl.obolibrary.org/obo/ENVO_03620006> <http://purl.obolibrary.org/obo/ENVO_03620007> <http://purl.obolibrary.org/obo/ENVO_03620008> <http://purl.obolibrary.org/obo/PATO_0002057> <http://purl.obolibrary.org/obo/PATO_0002058> <http://purl.obolibrary.org/obo/PATO_0045051>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_53243> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_53550> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_60034> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
Expand All @@ -49007,6 +49112,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000111> "editor preferred term~editor preferred label")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000412> "imported from")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000424> "expand expression to")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0000068> "A quality of an entity that is descriptive or observational, typically not represented numerically.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0001900> "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0001900> "temporal interpretation")
)