Spawn Random DNA Sequences
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devtools::install_github('CDCgov/SeqSpawnR')HIV_Samples <- SeqSpawnR::spawn_sequences(10)HIV_Samples will be a vector of mutated HIV sequences. By default, it uses the pol region of the HXB2 strain of HIV as the DNA seed. To set the seed to a different DNA Sequence:
mySeed <- 'GATTACA'
HIV_Samples <- SeqSpawnR::spawn_sequences(10, seed = mySeed)Where mySeed is a string containing the DNA Sequence you wish to use as your seed.
If you'd like to write the samples into a fasta file...
filename <- 'HIV_Samples.fasta'
SeqSpawnR::write_fasta(HIV_Samples, filename)This repository constitutes a work of the United States Government and is not subject to domestic copyright protection under 17 USC § 105. This repository is in the public domain within the United States, and copyright and related rights in the work worldwide are waived through the CC0 1.0 Universal public domain dedication. All contributions to this repository will be released under the CC0 dedication. By submitting a pull request you are agreeing to comply with this waiver of copyright interest.
The repository utilizes code licensed under the terms of the Apache Software License and therefore is licensed under ASL v2 or later.
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