Skip to content
@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

Pinned Loading

  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 351 151

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 14

Repositories

Showing 10 of 409 repositories
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 17, 2025
  • sciduck Public
    AllenInstitute/sciduck’s past year of commit activity
    Jupyter Notebook 1 3 4 0 Updated Jan 17, 2025
  • cell_type_mapper Public

    Repository for storing prototype functionality implementations for the BKP

    AllenInstitute/cell_type_mapper’s past year of commit activity
    Python 21 4 5 2 Updated Jan 17, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 4 BSD-3-Clause 1 57 1 Updated Jan 17, 2025
  • openscope_databook Public

    OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

    AllenInstitute/openscope_databook’s past year of commit activity
    Python 64 20 13 2 Updated Jan 17, 2025
  • deep-neurographs Public

    Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Jan 17, 2025
  • scrattch Public

    Single cell RNA-seq analysis for transcriptomic type characterization

    AllenInstitute/scrattch’s past year of commit activity
    R 35 3 0 0 Updated Jan 17, 2025
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Jan 17, 2025
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 58 22 14 4 Updated Jan 17, 2025
  • axonal_connectomics Public

    Repository for tools developed for axonal connectomics

    AllenInstitute/axonal_connectomics’s past year of commit activity
    Jupyter Notebook 2 1 3 3 Updated Jan 16, 2025
View all repositories