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1. eQTLHap eQTLHap Public

   eQTLHap: a comprehensive eQTL analysis tool.

   R 10 2

2. consHap consHap Public

   Majority voting method to construct consensus haplotype estimator from multiple phased haplotypes.

   Python 3 1

3. sagc-bioinformatics/mgikit sagc-bioinformatics/mgikit Public

   mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

   Rust 12 1

4. GESim GESim Public

   Gene expression simulator from genotype/haplotype data

   R 1

5. sagc-bioinformatics/mgikit-multiqc sagc-bioinformatics/mgikit-multiqc Public

   MultiQC plugin to parse and integrate reports generated by mgikit demultiplexer

   Python

6. AusARG/pipesnake AusARG/pipesnake Public

   ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-read 'second-generation' sequencing data.

   Nextflow 7 3