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PSAMM 1.0

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@yingzhanguri yingzhanguri released this 03 Mar 22:38
· 452 commits to master since this release
  • Adds the new modelmapping command for mapping reactions and
    compounds ids between different GEMs.
  • Adds the new psammotate command for generating draft GEMs
    using a template model and a mapping of orthologous genes to
    another organism.
  • Adds the new gimme command which implements the GIMME algorithm
    as described in Becker and Palsson, 2008 (PMID: 18483554).
  • Updates the search command to allow for searching of strings
    within any reaction or compound property.
  • Updates to the tableexport and excelexport commands to allow
    for the export of additional gene and reaction information.
  • Adds new section to the tutorial to detail how to use the
    findprimarypairs commands.
  • Renamed duplicatescheck command to dupcheck.