Organize the notebooks and files

+ Rename notebooks

+ Move away obsolete codes and notebooks

+ Update the README.md & links to the notebooks

.gitignore

@@ -6,4 +6,5 @@
 pic
 post
 data
-notebooks/old/*
+notebooks/other/*
+codes/old/*

README.md

@@ -1,25 +1,24 @@
-## Jupyter Notebooks for:
+# Codes, docs, and Jupyter Notebooks for:
 
-Oliver L. Stephenson, Yuan-Kai Liu, Zhang Yunjun, Mark Simons, and Paul Rosen (2022). The Impact of Plate Motions on Long-Wavelength InSAR-Derived Velocity Fields
+Oliver L. Stephenson, Yuan-Kai Liu, Zhang Yunjun, Mark Simons, and Paul Rosen (2022). The Impact of Plate Motions on Long-Wavelength InSAR-Derived Velocity Fields. *Geophysical Research Letters [Paper # 2022GL099835]*.
 
 
-### Data 
+## Folder structure:
 
-The used data in the paper is not available now
-+ Sentinel-1 ascending track 087 in Gulf of Aqaba
-+ Sentinel-1 descending track 021 in Gulf of Aqaba
-+ .... TBA
+### codes
+Mostly plotting utility functions that are called in the notebooks.
 
-For each dataset, it includes:
+### inputs
++ JSON files that contains the original file paths.
++ A table of NNR MORVEL 56 plate motion model (not been used here; only for future reference)
 
-+ Solid Earth tides prediction (using PySolid)
-+ ERA5 tropospheric delay prediction (using PyAPS)
-+ Ionosphere estimate using split-band algorithm
+### notebooks
+Jupyter Notebooks for plotting
 
-
-### Figures
-
-NOTE: This notebook is based on the released version of MintPy-1.3.3 and NOT maintained for furture development.
-+ [Fig. 1]
-+ [Fig. 2]
-+ ... TBA
+NOTE: These notebook is based on the released version of MintPy-1.3.3 and NOT maintained for furture development.
++ [Fig. insets](https://nbviewer.org/github/yuankailiu/2022-BulkMotion/blob/main/notebooks/Fig_insets_comparePMMs.ipynb) - Plate motion model insets showing the plate geometry and the motion quivers
++ [Fig. 2 and S1-S5](https://nbviewer.org/github/yuankailiu/2022-BulkMotion/blob/main/notebooks/Fig2_S1-S5_correction_series.ipynb) - A suite of corrections applied in Makran, Aqaba, and Australia regions (both ascending and descending)
++ [Fig. 3 and 4](https://nbviewer.org/github/yuankailiu/2022-BulkMotion/blob/main/notebooks/Fig3-4_separate.ipynb) - Evaluate the impact of plate motion model correction on Makran, Aqaba, and Australia regions (plot velocity maps, range ramps)
++ [Fig. S6](https://nbviewer.org/github/yuankailiu/2022-BulkMotion/blob/main/notebooks/FigS6_roughEstimate.ipynb) - Global impact of the range ramp due to plate motion. This's an rough estimate using the Aqaba LOS geometry
++ [Fig. S7](https://nbviewer.org/github/yuankailiu/2022-BulkMotion/blob/main/notebooks/FigS7_asc_dsc2hv.ipynb) - Quasi-vertical and -horizontal decomposition of the velocity field using both ascending and descending velocities
++ other notebooks that are not used in the paper directly