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Fast and flexible visualization of multiple alignments of biological sequences.

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Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
debian		debian
msaview		msaview
msaview_plugin_backbone		msaview_plugin_backbone
msaview_plugin_biomart		msaview_plugin_biomart
msaview_plugin_clustal		msaview_plugin_clustal
msaview_plugin_cscore		msaview_plugin_cscore
msaview_plugin_disopred		msaview_plugin_disopred
msaview_plugin_ensembl		msaview_plugin_ensembl
msaview_plugin_hmmer		msaview_plugin_hmmer
msaview_plugin_nexus		msaview_plugin_nexus
msaview_plugin_pdb		msaview_plugin_pdb
msaview_plugin_pfam		msaview_plugin_pfam
msaview_plugin_pymol		msaview_plugin_pymol
msaview_plugin_stockholm		msaview_plugin_stockholm
msaview_plugin_substitution_matrix		msaview_plugin_substitution_matrix
msaview_plugin_uniprot		msaview_plugin_uniprot
msaview_ui		msaview_ui
src		src
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.txt		README.txt
msaview.py		msaview.py
setup.cfg		setup.cfg
setup.py		setup.py

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==========================================================================
MSAView - Fast and flexible visualisation of multiple sequence alignments.
==========================================================================

Copyright (c) 2011 Joel Hedlund.

Contact: Joel Hedlund <[email protected]>

MSAView is a modular, configurable and extensible package for analysing and 
visualising multiple sequence alignments and sequence features. It can import 
and display data from online sources, and it can launch external viewers for 
additional details, such as structures and database pages. MSAView is highly
configurable and has a user extendable preset library, as well as a plugin 
architecture which allows for straightforward extension of the program's 
capabilities.

MSAVIew has a fast graphical user interface that remains responsive even for 
large datasets, as well as a powerful command line client which allows the user
to generate consistent views for hundreds of protein families at a time. All 
the program's functionality is also directly accessible via the python API for
more advanced operations. 
 
If you have problems with this package, please contact the author.


Requirements
============
Python 2, version 2.6 or later.


Copyright
=========
 
The MIT License

Copyright (c) 2011 Joel Hedlund.

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.