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Sanger Institute Systems Group

Wellcome Sanger Institute Systems tools

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  1. pcp pcp Public

    Parallel copy tool

    Python 33 10

  2. pwalk pwalk Public

    Parallel filesystem walking utilities and library.

    Python 6 5

  3. lsf-log-watch lsf-log-watch Public

    LSF log watching via AMQP

    Python 2 2

  4. ceph-disk-utils ceph-disk-utils Public

    Shell utilities for managing disks within ceph clusters

    Shell 2

  5. osdataproc osdataproc Public

    osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark…

    Jinja 2 3

  6. wr wr Public

    experimental reimplementation of wr using TDD

    Go 2 1

Repositories

Showing 10 of 35 repositories
  • wrstat Public

    A more reliable and efficient replacement for mpistat using wr.

    Go 0 MIT 2 0 0 Updated Apr 8, 2025
  • wr Public

    experimental reimplementation of wr using TDD

    Go 2 MIT 1 0 4 Updated Jan 27, 2025
  • benchmarking Public

    A benchmarking suite for Sanger's Genomics Workloads

    Python 0 AGPL-3.0 0 0 0 Updated Oct 1, 2024
  • snakemake-lsf Public Forked from Snakemake-Profiles/lsf

    Sanger snakemake profile for running jobs on an LSF cluster

    Python 0 MIT 22 0 0 Updated Apr 19, 2024
  • lsf-log-watch Public

    LSF log watching via AMQP

    Python 2 GPL-3.0 2 3 1 Updated Mar 13, 2024
  • lsf-criu-integration Public
    Python 0 MIT 0 0 0 Updated Jul 28, 2023
  • osdataproc Public

    osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.

    Jinja 2 3 0 1 Updated Jan 24, 2023
  • simple-image-builder Public
    Shell 0 GPL-3.0 0 0 5 Updated Dec 8, 2022
  • wtsi-ssg-lustre-jobstats Public
    Python 0 1 0 0 Updated Nov 28, 2022
  • Docker-create Public

    Dockerfiles and configuration components for HPC Singularity and cloud use

    Dockerfile 0 GPL-3.0 0 0 0 Updated Oct 2, 2022
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