You can install this package using pip
pip install - e /path/to/pysoscope
To run on the cluster first make the conda environment:
conda create --name env_maldi --file requirements.txt
conda acivate env_maldi
pip install - e /path/to/pysoscope
Modify the SLURM script we recommend using nano or vim.
cd /path/to/pysoscope
cd ./scripts
nano cue_import_on_cluster.sh
Make sure you change your email adress, the wall time and the scirpt you want to run:
...
#SBATCH --time=00:30:00 # total run time limit (HH:MM:SS)
...
#SBATCH [email protected]
...
# CHOOSE THE SCIRPT YOU NEED TO RUN BELOW
# =======================================
python import_mat_substract_background.py
# python import_mat.py
# =======================================
to que the job on the cluster use:
sbatch cue_import_on_cluster.py
88791 # Returns job id
Cancel the job
scancel 88791 #Job id