adding nci script for linrate and time series processing

vwmaus · Jul 19, 2016 · 75ccbdd · 75ccbdd
1 parent 1b51a9b
commit 75ccbdd
Showing 1 changed file with 22 additions and 0 deletions.
diff --git a/pyrate/nci/nci_script_pyrate.sh b/pyrate/nci/nci_script_pyrate.sh
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+#!/bin/bash
+#PBS -P dg9
+#PBS -q normal
+#PBS -l walltime=12:00:00,mem=256GB,ncpus=128,jobfs=200GB
+#PBS -l wd
+module rm intel-fc intel-cc
+module load intel-mkl
+module load python/2.7.6
+module load python/2.7.6-matplotlib
+module rm openmpi/1.6.3
+module load openmpi/1.8
+module load gdal/1.11.1-python
+module load pypar/30May-2.7.6-1.8
+export PYRATEPATH=/g/data/dg9/sudipta/PyRate
+PYTHONPATH=$PYRATEPATH:$PYTHONPATH
+PYTHONPATH=/g/data/dg9/sudipta/site-packages:$PYTHONPATH
+export GDAL_DISABLE_READDIR_ON_OPEN=YES
+export PYTHONPATH
+mpirun -np 128 python /g/data/dg9/sudipta/PyRate/pyrate/nci/run_pyrate_pypar.py /g/data/dg9/sudipta/PyRate/pyrate.conf
+mpirun -map-by ppr:2:node python /g/data/dg9/sudipta/PyRate/pyrate/nci/run_pyrate_pypar_2.py /g/data/dg9/sudipta/PyRate/pyrate.conf
+mpirun -np 128 python /g/data/dg9/sudipta/PyRate/pyrate/nci/run_pyrate_pypar_3.py /g/data/dg9/sudipta/PyRate/pyrate.conf
+mpirun -map-by ppr:8:node python /g/data/dg9/sudipta/PyRate/pyrate/nci/postprocessing.py /g/data/dg9/sudipta/PyRate/pyrate.conf