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73 climate matching function #77

Merged
merged 135 commits into from
Mar 14, 2022
Merged

Commits on May 19, 2021

  1. Create future.rda

    #73
    
    This .rda contains the following future climate scenarios:
    - "2001-2025-A1FI"
    - "2026-2050-A1FI"
    - "2051-2075-A1FI"
    - "2071-2100_Beck"
    - "2076-2100-A1FI"
    
    from Rubel & Kottek 2010 & Beck et al. 2018
    SanderDevisscher committed May 19, 2021
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  2. Create observed.rda

    This .rda file contain these observed climate scenarios
    - "1901-1925"
    - "1926-1950"
    - "1951-1975"
    - "1976-2000"
    from Rubel & Kottek 2010.
    SanderDevisscher committed May 19, 2021
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  3. Create data.R

    #73
    
    @damianooldoni is this ok ?
    SanderDevisscher committed May 19, 2021
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Commits on May 20, 2021

  1. Create legend.rda

    SanderDevisscher committed May 20, 2021
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  2. Create climate_match.R

    SanderDevisscher committed May 20, 2021
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  3. Add setup

    SanderDevisscher committed May 20, 2021
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  4. Add region checks

    SanderDevisscher committed May 20, 2021
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  5. Add crs

    SanderDevisscher committed May 20, 2021
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  6. Create get_cred.R

    #73
    
    Simple function to get/store credentials from/into system environment.
    SanderDevisscher committed May 20, 2021
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  7. Add taxonkey check

    SanderDevisscher committed May 20, 2021
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  9. Update climate_match.R

    SanderDevisscher committed May 20, 2021
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  11. Make get_cred permanent

    SanderDevisscher committed May 20, 2021
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  12. Update data.R

    SanderDevisscher authored May 20, 2021
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  13. Update data.R

    SanderDevisscher authored May 20, 2021
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  14. Add data to spatial

    SanderDevisscher committed May 20, 2021
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  17. add threshhold parameters

    SanderDevisscher committed May 20, 2021
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Commits on May 21, 2021

  1. complete climate matching

    SanderDevisscher committed May 21, 2021
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  3. Update climate_match.R

    SanderDevisscher committed May 21, 2021
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Commits on May 24, 2021

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Commits on May 26, 2021

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Commits on Jun 3, 2021

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  3. small fixes

    SanderDevisscher committed Jun 3, 2021
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Commits on Jul 2, 2021

  1. Add current climate map

    SanderDevisscher committed Jul 2, 2021
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  6. Add future climate maps

    SanderDevisscher committed Jul 2, 2021
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Commits on Jul 5, 2021

  1. Add documentation

    SanderDevisscher committed Jul 5, 2021
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  2. remove libraries

    SanderDevisscher committed Jul 5, 2021
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Commits on Jul 7, 2021

  1. Change colorscheme maps

    SanderDevisscher committed Jul 7, 2021
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  3. change scenario order

    SanderDevisscher committed Jul 7, 2021
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Commits on Jul 8, 2021

  1. remove load_all()

    SanderDevisscher committed Jul 8, 2021
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  2. set package to use

    SanderDevisscher committed Jul 8, 2021
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  3. fix rerun logic

    SanderDevisscher committed Jul 8, 2021
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Commits on Jul 9, 2021

  1. fix issue with join

    SanderDevisscher committed Jul 9, 2021
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Commits on Jul 28, 2021

  1. Solve some imports issues

    @SanderDevisscher: variables from rda files are automatically availbale for use i na package even if they are lazy loaded. No need to import devtools as package.
    damianooldoni committed Jul 28, 2021
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  3. devtools::document()

    damianooldoni committed Jul 28, 2021
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  4. Update legend.rda

    See #73 (comment)
    
    Co-Authored-By: Sander Devisscher <[email protected]>
    damianooldoni and SanderDevisscher committed Jul 28, 2021
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  5. Updage legend.rda

    damianooldoni committed Jul 28, 2021
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Commits on Jul 29, 2021

  1. Correct legend.rda

    damianooldoni committed Jul 29, 2021
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  5. Improve documentation

    damianooldoni committed Jul 29, 2021
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Commits on Aug 2, 2021

  1. Fix issue with overfiltered species

    #73
    &
    inbo/riparias-prep#8
    
    @timadriaens @Andumort apparently there where some artifacts of previous filters present that caused the total number of records of Acorus gramineusto to drop to 50. (1) filtered records before 1950 and the other (2) filtered records with unknown (NA) coordinate uncertainty.
    
    (1) L176 & (2) L178
    
    (1) Since we have climate maps going back to 1901 I changed this to 1901.
    SanderDevisscher committed Aug 2, 2021
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  3. Add duplicate filter

    SanderDevisscher committed Aug 2, 2021
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  4. Fix legend issue

    SanderDevisscher committed Aug 2, 2021
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  6. Fix legend issues

    SanderDevisscher committed Aug 2, 2021
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  7. Enhance popup

    SanderDevisscher committed Aug 2, 2021
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  8. Fix typo

    SanderDevisscher committed Aug 2, 2021
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Commits on Aug 3, 2021

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Commits on Aug 4, 2021

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  2. add conditional maps

    SanderDevisscher committed Aug 4, 2021
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  3. small fix

    SanderDevisscher committed Aug 4, 2021
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  4. and instead of or

    SanderDevisscher committed Aug 4, 2021
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  5. Revert "and instead of or"

    This reverts commit 0e0bc0b.
    SanderDevisscher committed Aug 4, 2021
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  7. Add message

    SanderDevisscher committed Aug 4, 2021
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  8. remove whitespace

    SanderDevisscher committed Aug 4, 2021
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Commits on Aug 5, 2021

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Commits on Aug 19, 2021

  1. Add importfroms

    SanderDevisscher committed Aug 19, 2021
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  2. Add description

    SanderDevisscher committed Aug 19, 2021
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  3. Create get_cred.Rd

    SanderDevisscher committed Aug 19, 2021
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  4. Update climate_match.Rd

    SanderDevisscher committed Aug 19, 2021
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  5. Update DESCRIPTION

    SanderDevisscher committed Aug 19, 2021
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  6. Update future.Rd

    SanderDevisscher committed Aug 19, 2021
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  7. Update observed.Rd

    SanderDevisscher committed Aug 19, 2021
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  8. Update NAMESPACE

    SanderDevisscher committed Aug 19, 2021
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  10. Add LazyDataCompression

    damianooldoni committed Aug 19, 2021
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  12. Fix some notes

    SanderDevisscher committed Aug 19, 2021
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Commits on Aug 21, 2021

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  5. Set lazy = FALSE

    damianooldoni committed Aug 21, 2021
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Commits on Sep 9, 2021

  1. add dplyr to select

    #77
    
    in attempt to fix "Error: object of type 'closure' is not subsettable" - error
    SanderDevisscher committed Sep 9, 2021
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  2. Revert "add dplyr to select"

    This reverts commit 7fea371.
    SanderDevisscher committed Sep 9, 2021
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  3. another attempt

    SanderDevisscher committed Sep 9, 2021
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  4. Revert "another attempt"

    This reverts commit 5a545bf.
    SanderDevisscher committed Sep 9, 2021
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  5. Fix closure error

    SanderDevisscher committed Sep 9, 2021
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  7. Update NAMESPACE

    SanderDevisscher committed Sep 9, 2021
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  9. fix final legend

    SanderDevisscher committed Sep 9, 2021
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  12. Update NAMESPACE

    SanderDevisscher committed Sep 9, 2021
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Commits on Sep 10, 2021

  1. fix observations issue

    SanderDevisscher committed Sep 10, 2021
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Commits on Sep 15, 2021

  1. Fix spatial

    SanderDevisscher committed Sep 15, 2021
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  4. add custom region logic

    SanderDevisscher committed Sep 15, 2021
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  5. Update climate_match.Rd

    SanderDevisscher committed Sep 15, 2021
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  6. Update NAMESPACE

    SanderDevisscher committed Sep 15, 2021
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  8. Update climate_match.R

    SanderDevisscher committed Sep 15, 2021
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  9. Update NAMESPACE

    SanderDevisscher committed Sep 15, 2021
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Commits on Sep 17, 2021

  1. cleanup

    #77
    removes obselete region check
    SanderDevisscher committed Sep 17, 2021
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Commits on Mar 10, 2022

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Commits on Mar 11, 2022

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Commits on Mar 14, 2022

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  3. snakes

    SanderDevisscher committed Mar 14, 2022
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  4. Update climate_match.Rd

    SanderDevisscher committed Mar 14, 2022
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