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Python 3.12 support #794

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Python 3.12 support #794

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26260e0
Change CI to python 3.12
Lilly-May Aug 21, 2024
82ec70c
Change notebook CI to python 3.12
Lilly-May Aug 21, 2024
fe60f82
Updated submodule
Lilly-May Aug 21, 2024
025b176
Add graphviz dependency
Lilly-May Aug 21, 2024
9c19d02
Merge branch 'main' into feature/python_3_12
Lilly-May Aug 28, 2024
de0c851
Fixed estimator data retrieval
Lilly-May Aug 29, 2024
80c02ce
Obtain data based on dowhy version
Lilly-May Aug 29, 2024
17b0955
Estimate data retrieval only for latest dowhy versions
Lilly-May Aug 29, 2024
652c15f
Move graphviz installation
Lilly-May Aug 29, 2024
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4 changes: 2 additions & 2 deletions .github/workflows/run_notebooks.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -26,13 +26,13 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.11"
python-version: "3.12"

- name: Install UV
run: pip install uv

- name: Install ehrapy and additional dependencies
run: uv pip install --system . cellrank nbconvert ipykernel
run: uv pip install --system . cellrank nbconvert ipykernel graphviz

- name: Run ${{ matrix.notebook }} Notebook
run: jupyter nbconvert --to notebook --execute ${{ matrix.notebook }}
4 changes: 2 additions & 2 deletions .github/workflows/test.yml
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Expand Up @@ -24,9 +24,9 @@ jobs:
- os: ubuntu-latest
python: "3.10"
- os: ubuntu-latest
python: "3.11"
python: "3.12"
- os: ubuntu-latest
python: "3.11"
python: "3.12"
pip-flags: "--pre"

env:
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