frejus21 - TP Raman Maps - svi workflow

Option 1

If you have a Renater account (any university, CNRS, INRAE, etc.)

1. Go to https://jupyterhub.ijclab.in2p3.fr/
2. Start your server
3. Click on new -> terminal
4. Copy/paste the following command into the terminal: git clone https://github.com/shcrela/frejus21.git
5. Close the terminal after it finishes cloning.
6. Start (Double-click) the first notebook

Option 2

Run everything locally. (You must have ana(mini)conda installed)

1. Open the terminal¹ (Anaconda prompt pour Windows) on your computer and navigate to the folder of your choice.
2. Copy/Paste the following commands into your terminal:
3. git clone https://github.com/shcrela/frejus21.git
4. cd frejus21

If you don't have git installed, once on the github page clik on the only green button (on top-right of the github page and download zip

5. Download the data (click on your group to see the code to copy/paste into your terminal)

Example A1

wget ./data/exampleA1.wdf "https://filesender.renater.fr/download.php?token=91a45abe-86e3-4f9b-bf6c-f6cbfc01b2ec&files_ids=9013557"

ou bien:

download link

Example A2

    wget ./data/exampleA2.wdf "https://filesender.renater.fr/download.php?token=91a45abe-86e3-4f9b-bf6c-f6cbfc01b2ec&files_ids=9013560" 
ou bien:

download link

Example M1

    wget ./data/exampleM1.wdf "https://filesender.renater.fr/download.php?token=91a45abe-86e3-4f9b-bf6c-f6cbfc01b2ec&files_ids=9013556" 
ou bien:

download link

Example M1bis (avoid, too hard)

    wget ./data/exampleM2.wdf "https://filesender.renater.fr/download.php?token=91a45abe-86e3-4f9b-bf6c-f6cbfc01b2ec&files_ids=9013558"
ou bien:

download link

Example M3

    wget ./data/exampleM3.wdf "https://filesender.renater.fr/download.php?token=91a45abe-86e3-4f9b-bf6c-f6cbfc01b2ec&files_ids=9013559"
ou bien:

download link

Example M3bis

    wget ./data/exampleM4.wdf "https://filesender.renater.fr/download.php?token=91a45abe-86e3-4f9b-bf6c-f6cbfc01b2ec&files_ids=9013563"
ou bien:

download link

6. Optionally (create new conda environment)

conda env create -f environment.yml

conda activate frejus21

7. Start the jupyter lab/notebook
8. Open the first notebook

¹ If you're on Windows, then the Terminal would be the Anaconda prompt.
(click on the windows sign on your keyboard and type anaconda prompt

Option 3

(you won't be able to do all of the examples)

If neither of the above suits you.

Click on the binder icon