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@stjude-rust-labs

St. Jude Rust Labs

St. Jude's experimental Rust tools for the omics community.

St. Jude Rust Labs

St. Jude Rust Labs is a project at St. Jude Children's Research Hospital aimed at building a better foundation for omics analysis using Rust. See the individual repositories below for more information on what we're working on!

Disclaimer

St. Jude Rust Labs’ crates and command line applications may be used only for educational and basic research purposes and not for any other purpose. St. Jude Rust Labs’ crates and command line applications may not be used for diagnosis, medical care, or treatment of any patient, or for decision-making about any person (including assignment to a study or specific study arm or group), or to render medical advice or professional services. St. Jude Rust Labs’ crates and command line applications have not received approval or clearance by the U.S. Food and Drug Administration (FDA) or otherwise. St. Jude Rust Labs’ crates and command line applications are intended only to assist in research but not in decision-making about patients or research participants. The authors of the Rust Labs’ crates and command lines applications have no responsibility for any decisions made in the use of the crates and command line applications.

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  1. fq fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    Rust 91 5

  2. sprocket sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    Rust 89 18

  3. wdl wdl Public

    Rust crates for working with Workflow Description Language (WDL) documents.

    Rust 57 38

  4. crankshaft crankshaft Public

    A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

    Rust 41 22

  5. sprocket-vscode sprocket-vscode Public

    Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).

    TypeScript 8 9

  6. sprocket-action sprocket-action Public

    Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

    Shell 6 2

Repositories

Showing 10 of 15 repositories
  • wdl Public

    Rust crates for working with Workflow Description Language (WDL) documents.

    stjude-rust-labs/wdl’s past year of commit activity
    Rust 57 Apache-2.0 38 48 (1 issue needs help) 3 Updated Sep 5, 2025
  • sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    stjude-rust-labs/sprocket’s past year of commit activity
    Rust 89 Apache-2.0 18 4 3 Updated Sep 5, 2025
  • cloud-copy Public

    A cloud storage copy library and utility.

    stjude-rust-labs/cloud-copy’s past year of commit activity
    Rust 1 Apache-2.0 1 0 0 Updated Sep 5, 2025
  • crankshaft Public

    A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

    stjude-rust-labs/crankshaft’s past year of commit activity
    Rust 41 Apache-2.0 22 4 2 Updated Sep 3, 2025
  • fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    stjude-rust-labs/fq’s past year of commit activity
    Rust 91 MIT 5 4 0 Updated Sep 2, 2025
  • rfcs Public

    Requests For Comments for the St. Jude Rust Labs project

    stjude-rust-labs/rfcs’s past year of commit activity
    Shell 1 Apache-2.0 0 0 1 Updated Sep 2, 2025
  • sprocket-vscode Public

    Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).

    stjude-rust-labs/sprocket-vscode’s past year of commit activity
    TypeScript 8 Apache-2.0 9 2 1 Updated Sep 2, 2025
  • tes Public

    A crate for working with the Task Execution Service (TES) specification.

    stjude-rust-labs/tes’s past year of commit activity
    Rust 10 Apache-2.0 3 0 0 Updated Aug 20, 2025
  • http-cache-stream Public

    A HTTP cache that supports streaming bodies.

    stjude-rust-labs/http-cache-stream’s past year of commit activity
    Rust 3 Apache-2.0 2 1 0 Updated Aug 15, 2025
  • sprocket-action Public

    Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

    stjude-rust-labs/sprocket-action’s past year of commit activity
    Shell 6 Apache-2.0 2 0 0 Updated Aug 14, 2025

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