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Updated Biomart exports and added HCOP orthologs as an alternative #4

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merged 5 commits into from
Jan 29, 2024

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ianfd
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@ianfd ianfd commented Jan 23, 2024

Maybe that's also useful for others how are using this library.

ian and others added 5 commits January 23, 2024 10:19
Updated the exports of Biomart from human to mice and mice to human.
Added two new metadata columns: 'Homology Type' and 'Gene-order conservation score'

Added HGNC as an alternative to the Ensembl orthologs.
Changed default behaviour to 'biomart'

Changed capitalization of column names of HCOP to match biomart
Updated code to ignore capitalization of source for translation
@stefanpeidli stefanpeidli self-assigned this Jan 29, 2024
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This looks awesome; I will merge, build, and push the new version to PyPI.
Thanks for the improvements!

@stefanpeidli stefanpeidli merged commit 9f7e756 into stefanpeidli:main Jan 29, 2024
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2 participants