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@dhimmel

Daniel Himmelstein

dhimmel
New Hampshire

I'm a data scientist and researcher who develops software to make science more rigorous, transparent, and extensible.

My development includes contributions to:

  • Manubot, a tool for writing scholarly manuscripts on GitHub.
  • @hetio, software for hetnets in Python. See https://het.io/
  • open licensing for academic research outputs
  • data science tools. For example, I helped enable Pandas to read compressed files from URLs.

1 sponsor has funded dhimmel’s work.

@taskswithcode

Featured work

  1. manubot/rootstock

    Clone me to create your Manubot manuscript

    HTML 453
  2. hetio/hetionet

    Hetionet: an integrative network of disease

    HTML 265
  3. cognoma/cognoma

    Putting machine learning in the hands of cancer biologists

    Jupyter Notebook 96
  4. dhimmel/obonet

    OBO-formatted ontologies → networkx (Python 3)

    Python 136
  5. hetio/hetnetpy

    Hetnets in Python (relocated from dhimmel/hetio)

    Python 92
  6. dhimmel/hackjohn

    Bot to monitor for southbound permit spaces on the John Muir Trail

    Python 25

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