JP-3967: Update test to go with stcal PR 421 changes

[pllim]

Resolves JP-3967

This PR addresses #8124 and is a companion for spacetelescope/stcal#421 .

TODO

• Make sure CI passes.
• Do we need change log? There is change log in the stcal PR but jwst users might not read stcal change log.
• Verify that RT failures are expected by
  • checking test summary to ensure failures are only from DQ extensions
    • re-check test_nirspec_picture_frame[rate]
  • checking test results to ensure only saturation flag is added, and added where it is supposed to by also comparing to input ramp.fits, which requires local run
    • resolve test_niriss_image_detector1_with_likelihood[likely_rate]
• Drop the TMP commit pointing to upstream PR branch once point is proven, and upstream PR is merged.

Note: The following uncommitted diff was necessary to decouple CHARGELOSS effect from ramp fitting in checking test results locally.

--- a/jwst/regtest/test_niriss_image.py
+++ b/jwst/regtest/test_niriss_image.py
@@ -162,6 +162,7 @@ def run_detector1_with_likelihood_fitting(rtdata_mod
ule, resource_tracker):
         rtdata_module.input,
         "--output_file=jw01094001002_02107_00001_nis_likely",
         "--steps.ramp_fit.algorithm=LIKELY",
+        "--steps.charge_migration.skip=True",
     ]
     with resource_tracker.track():
         Step.from_cmdline(args)

Tasks

• If you have a specific reviewer in mind, tag them.
• add a build milestone, i.e. Build 12.0 (use the latest build if not sure)
• Does this PR change user-facing code / API? (if not, label with no-changelog-entry-needed)
  • write news fragment(s) in changes/: echo "changed something" > changes/<PR#>.<changetype>.rst (see changelog readme for instructions)
  • update or add relevant tests
  • update relevant docstrings and / or docs/ page
  • start a regression test and include a link to the running job (click here for instructions) using stcal@git+https://github.com/pllim/stcal.git@life-of-a-sat-grid -- https://github.com/spacetelescope/RegressionTests/actions/runs/19682955885 and https://github.com/spacetelescope/RegressionTests/actions/runs/19901568465 and https://github.com/spacetelescope/RegressionTests/actions/runs/20086800853 and https://github.com/spacetelescope/RegressionTests/actions/runs/20108700591 and https://github.com/spacetelescope/RegressionTests/actions/runs/20248199486 and https://github.com/spacetelescope/RegressionTests/actions/runs/20289156418
    • Do truth files need to be updated ("okified")?
      • after the reviewer has approved these changes, run okify_regtests to update the truth files
• if a JIRA ticket exists, make sure it is resolved properly

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 85.65%. Comparing base (1193035) to head (6021e8b).
⚠️ Report is 21 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main   #10036      +/-   ##
==========================================
- Coverage   85.72%   85.65%   -0.07%     
==========================================
  Files         367      365       -2     
  Lines       38235    38171      -64     
==========================================
- Hits        32776    32696      -80     
- Misses       5459     5475      +16     

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