debug #241
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Print R version and session info | |
| run: | | |
| Rscript -e "print(R.version)" | |
| Rscript -e "print(sessionInfo())" | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libarmadillo-dev liblapack-dev libblas-dev libopenblas-dev | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Set up Fortran compiler (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install gcc | |
| echo "FC=/usr/local/bin/gfortran" >> $GITHUB_ENV | |
| echo "FLIBS=-L/usr/local/lib/gcc/current -lgfortran -lquadmath -lm" >> $GITHUB_ENV | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| - name: Debug information | |
| run: | | |
| pwd | |
| ls -l | |
| R -e "print(.libPaths())" | |
| - name: Check package structure | |
| run: | | |
| ls -R | |
| - name: Build package | |
| run: | | |
| R CMD build . | |
| - name: Check built package | |
| run: | | |
| ls -l *.tar.gz | |
| - name: Install and load package | |
| run: | | |
| PKG_FILE=$(ls -1t *.tar.gz | head -n 1) | |
| R CMD INSTALL ${PKG_FILE} | |
| Rscript -e "library(bdrc); print(ls('package:bdrc'))" | |
| - name: Test coverage | |
| run: | | |
| covr::codecov(quiet = FALSE, clean = FALSE, install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package"), verbose = TRUE) | |
| shell: Rscript {0} | |
| timeout-minutes: 15 |