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Add setup script #19

Merged
merged 6 commits into from
Nov 21, 2024
Merged

Add setup script #19

merged 6 commits into from
Nov 21, 2024

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sof202
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@sof202 sof202 commented Nov 21, 2024

Description

This pull request will add a setup script and ensure that the required software is loaded when it is needed. This PR includes a renv environment like my other projects to ensure that R dependencies are installed properly. A persistent problem is that I need the latest version of R and so if I want to have bedtools in the same conda environment I need > v2.31.1. However, a critical bug has still yet to be fixed (and even if I did fix it, it won't get integrated into the production branch).

Type of change

  • Bug fix
  • New feature
  • Code refactor
  • Documentation update

Checklist:

  • My code is consistent in style with the rest of ChromCompare
  • I have performed a self-review of my own code
  • I have made corresponding changes to the documentation

.Rprofile that exists in the Rscripts directory will ensure that renv is
bootstrapped upon exectuting the selected Rscript.
@sof202 sof202 added the enhancement New feature or request label Nov 21, 2024
@sof202 sof202 linked an issue Nov 21, 2024 that may be closed by this pull request
2 tasks
@sof202 sof202 merged commit dbacae7 into main Nov 21, 2024
@sof202 sof202 deleted the add-setup-script branch November 21, 2024 16:52
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[Enhancement suggestion]: Add a setup script
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