Merge pull request #2 from soedinglab/annotate_w_cat

Replaced two instances of join with cat in annotate.sh
soedinglab · Jul 31, 2024 · e15e316 · e15e316
2 parents 70b2a60 + fd694e4
commit e15e316
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/data/annotate.sh b/data/annotate.sh
@@ -238,8 +238,10 @@ if notExists "${TMP_PATH}/tmp_join.tsv"; then
 	LC_ALL=C sort -s -k1b,1 "${TMP_PATH}/seq_searchDB.tsv" | awk -F '\t' -v OFS='\t' '{ $(NF+1) = "seq-seq search"; print}' | awk -F '\t' -v OFS='\t' '{ $(NF+1) = "SwissProt"; print}'>> "${TMP_PATH}/seq_search_filt.tsv"
 	rm -f "${TMP_PATH}/seq_searchDB.tsv"
 
-	join -j 1 -a1 -a2 -t ' ' "${TMP_PATH}/prof1_search_annot.tsv" "${TMP_PATH}/prof2_search_annot.tsv" >> "${TMP_PATH}/tmp_join.tsv"
-	join -j 1 -a1 -a2 -t ' ' "${TMP_PATH}/tmp_join.tsv" "${TMP_PATH}/seq_search_filt.tsv" >> "${TMP_PATH}/restmp"
+	#join -j 1 -a1 -a2 -t ' ' "${TMP_PATH}/prof1_search_annot.tsv" "${TMP_PATH}/prof2_search_annot.tsv" >> "${TMP_PATH}/tmp_join.tsv"
+	#join -j 1 -a1 -a2 -t ' ' "${TMP_PATH}/tmp_join.tsv" "${TMP_PATH}/seq_search_filt.tsv" >> "${TMP_PATH}/restmp"
+	cat "${TMP_PATH}/prof1_search_annot.tsv" "${TMP_PATH}/prof2_search_annot.tsv" >> "${TMP_PATH}/tmp_join.tsv"
+	cat "${TMP_PATH}/tmp_join.tsv" "${TMP_PATH}/seq_search_filt.tsv" >> "${TMP_PATH}/restmp"
 
 	rm -f "${TMP_PATH}/tmp_join.tsv"
 fi