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creators/Workflow_Parameterization_for_HPC - added slide to explain f…
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…ile system latency (layout)
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cmeesters committed Feb 8, 2024
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Expand Up @@ -127,7 +127,8 @@ \section{Parametizing your Workflow - II}
\begin{frame}
\frametitle{\Interlude{What is File System Latency? II}}
\begin{docs}{Background}
Some clusters use NFS (Network File System). There file system latency \emph{can} be an issue.\newline
Some clusters use NFS (Network File System). There, file system latency \emph{can} be an issue.\newline
\pause
On parallel file systems, the latency usually is very low.
\end{docs}
\end{frame}
Expand All @@ -139,6 +140,10 @@ \subsection{Global Workflow Configuration}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{frame}[fragile]
\frametitle{\Snakemake{} Profiles}
\begin{hint}
Profiles can shorten your command lines and be an easy remedy for the described issues!
\end{hint}
\pause
Two kinds of profiles are supported:
\begin{itemize}[<+->]
\item A global profile that is defined in a system-wide or user-specific configuration directory (on Linux, this will be \altverb{\~/.config/snakemake} and \altverb{/etc/xdg/snakemake}, you can find the answer for your system via \altverb{snakemake --help}).
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