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Update Software_Provisioning_with_Snakemake.tex
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add dash for env-modules option
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mptrsen authored Apr 12, 2024
1 parent 6589dc3 commit 373408a
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4 changes: 2 additions & 2 deletions slides/creators/Software_Provisioning_with_Snakemake.tex
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Expand Up @@ -171,7 +171,7 @@ \subsection{Environment Modules}
\frametitle{Using Environment Modules II}
When \Snakemake{} is executed with
\begin{lstlisting}[language=Bash, style=Shell]
snakemake --sdm envmodules
snakemake --sdm env-modules
\end{lstlisting}
it will load the defined modules in the given order, instead of using the also defined conda environment.
\pause
Expand All @@ -196,4 +196,4 @@ \subsection{Summing Up}
snakemake --help
\end{lstlisting}
for an overview or \lhref{https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html}{the official documentation}.
\end{frame}
\end{frame}

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