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chore: Updated GitHub actions #6

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chore: Updated GitHub actions #6

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f716f79
Updated GitHub actions
supermaxiste Aug 18, 2023
13be1d4
chore: fix gh action versions and README
supermaxiste Aug 18, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/conventional-prs.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
title-format:
runs-on: ubuntu-latest
steps:
- uses: amannn/action-semantic-pull-request@v3.4.0
- uses: amannn/action-semantic-pull-request@v5.2.0
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
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14 changes: 7 additions & 7 deletions .github/workflows/main.yml
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Expand Up @@ -11,9 +11,9 @@ jobs:
Formatting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
- name: Formatting
uses: github/super-linter@v4
uses: super-linter/super-linter@v5
env:
VALIDATE_ALL_CODEBASE: false
DEFAULT_BRANCH: main
Expand All @@ -23,9 +23,9 @@ jobs:
Linting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
- name: Lint workflow
uses: snakemake/snakemake-github-action@v1.24.0
uses: snakemake/snakemake-github-action@v1.25.1
with:
directory: .
snakefile: workflow/Snakefile
Expand All @@ -37,17 +37,17 @@ jobs:
- Linting
- Formatting
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Test workflow
uses: snakemake/snakemake-github-action@v1.24.0
uses: snakemake/snakemake-github-action@v1.25.1
with:
directory: .test
snakefile: workflow/Snakefile
args: "--use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp"

- name: Test report
uses: snakemake/snakemake-github-action@v1.24.0
uses: snakemake/snakemake-github-action@v1.25.1
with:
directory: .test
snakefile: workflow/Snakefile
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2 changes: 1 addition & 1 deletion .github/workflows/release-please.yml
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Expand Up @@ -10,7 +10,7 @@ jobs:
runs-on: ubuntu-latest
steps:

- uses: GoogleCloudPlatform/release-please-action@v2
- uses: GoogleCloudPlatform/release-please-action@v3
id: release
with:
release-type: go # just keep a changelog, no version anywhere outside of git tags
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -11,7 +11,7 @@ A Snakemake workflow for `<description>`

The usage of this workflow is described in the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/?usage=<owner>%2F<repo>).

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) <repo>sitory and its DOI (see above).
If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) `<repo>`sitory and its DOI (see above).

# TODO

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