Skip to content

Commit

Permalink
fix(cli): show default for fix branching
Browse files Browse the repository at this point in the history
  • Loading branch information
william-silversmith committed Feb 2, 2024
1 parent da3f58c commit 0af4ea0
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion igneous_cli/cli.py
Original file line number Diff line number Diff line change
Expand Up @@ -1152,7 +1152,7 @@ def skeletongroup():
@click.option('--mip', default=0, help="Perform skeletonizing using this level of the image pyramid.", show_default=True)
@click.option('--shape', type=Tuple3(), default=(512, 512, 512), help="Set the task shape in voxels.", show_default=True)
@click.option('--fill-missing', is_flag=True, default=False, help="Interpret missing image files as background instead of failing.", show_default=True)
@click.option('--fix-branching', is_flag=True, default=True, help="Trades speed for quality of branching at forks. Default: True")
@click.option('--fix-branching', is_flag=True, default=True, help="Trades speed for quality of branching at forks.", show_default=True)
@click.option('--fix-borders', is_flag=True, default=True, help="Allows trivial merging of single voxel overlap tasks. Only switch off for datasets that fit in a single task.", show_default=True)
@click.option('--fix-avocados', is_flag=True, default=False, help="Fixes somata where nuclei and cytoplasm have separate segmentations.", show_default=True)
@click.option('--fill-holes', is_flag=True, default=False, help="Preprocess each cutout to eliminate background holes and holes caused by entirely contained inclusions. Warning: May remove labels that are considered inclusions.", show_default=True)
Expand Down

0 comments on commit 0af4ea0

Please sign in to comment.