feat: skeletonize (most) autapses and improve cross section analysis #343

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Run time

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Job	Run time
build (3.8)	7m 24s
build (3.9)	6m 59s
build (3.10)	7m 39s
build (3.11)	6m 47s
build (3.12)	7m 1s
	35m 50s