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seqan / dream-stellar Public

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[FEAT] Adaptive seeding from pattern sample#140

Draft

eaasna wants to merge 11 commits intomainseqan/dream-stellar:mainfrom

adaptive_seedingseqan/dream-stellar:adaptive_seedingCopy head branch name to clipboard

Conversation Commits11 (11)Checks Files changed

Draft

[FEAT] Adaptive seeding from pattern sample#140
eaasna wants to merge 11 commits intomainfrom
adaptive_seeding

Commits

Commits on Feb 28, 2025

Do not write empty output files
eaasna
committed
Fix environment variable
eaasna
committed
Adapt threshold for each pattern
eaasna
committed
Cleaner output log
eaasna
committed
Fix adaptive seeding
eaasna
committed
Try to adapt threshold based on sample of patterns
eaasna
committed
Adapt threshold by mean
eaasna
committed
Remove debugging
eaasna
committed
Make tests with --static-threshold
eaasna
committed
Remove all debugging
eaasna
committed
Sample more patterns
eaasna
committed

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