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bb3e9e4 · Oct 3, 2020

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Download metadata from IDC as seattle_metadata.tsv:

python download_sfs_metadata.py

Produce GeoJSON from this metadata as samples.geojson:

python metadata_to_geojson.py --metadata seattle_metadata.tsv --lat-longs lat_longs.tsv --output samples.geojson

python metadata_to_geojson.py --metadata seattle_metadata.tsv --lat-longs lat_longs.tsv --site-categories community --output samples_community.geojson

python metadata_to_geojson.py --metadata seattle_metadata.tsv --lat-longs lat_longs.tsv --site-categories clinical --output samples_clinical.geojson

Then open heatmap.html in a browser with cross-origin allowed, ie:

open -a Google\ Chrome --args --disable-web-security --allow-file-access-from-files

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Simple heatmap display of sample locations

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