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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,17 +1,17 @@ | ||
| # Based on pydata/xarray | ||
| codecov: | ||
| require_ci_to_pass: no | ||
| require_ci_to_pass: no | ||
|
|
||
| coverage: | ||
| status: | ||
| project: | ||
| default: | ||
| # Require 1% coverage, i.e., always succeed | ||
| target: 1 | ||
| patch: false | ||
| changes: false | ||
| status: | ||
| project: | ||
| default: | ||
| # Require 1% coverage, i.e., always succeed | ||
| target: 1 | ||
| patch: false | ||
| changes: false | ||
|
|
||
| comment: | ||
| layout: diff, flags, files | ||
| behavior: once | ||
| require_base: no | ||
| layout: diff, flags, files | ||
| behavior: once | ||
| require_base: no |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,23 +1,29 @@ | ||
| { | ||
| "template": "https://github.com/scverse/cookiecutter-scverse", | ||
| "commit": "7cc5403b05e299d7a4bb169c2bd8c27a2a7676f3", | ||
| "checkout": null, | ||
| "context": { | ||
| "cookiecutter": { | ||
| "project_name": "simple-scvi", | ||
| "package_name": "simple_scvi", | ||
| "project_description": "External and simple implementation of scVI", | ||
| "author_full_name": "Adam Gayoso", | ||
| "author_email": "[email protected]", | ||
| "github_user": "adamgayoso", | ||
| "project_repo": "https://github.com/scverse/simple-scvi", | ||
| "license": "BSD 3-Clause License", | ||
| "_copy_without_render": [ | ||
| ".github/workflows/**.yaml", | ||
| "docs/_templates/autosummary/**.rst" | ||
| ], | ||
| "_template": "https://github.com/scverse/cookiecutter-scverse" | ||
| } | ||
| }, | ||
| "directory": null | ||
| "template": "https://github.com/scverse/cookiecutter-scverse", | ||
| "commit": "87a407a65408d75a949c0b54b19fd287475a56f8", | ||
| "checkout": "v0.4.0", | ||
| "context": { | ||
| "cookiecutter": { | ||
| "project_name": "simple-scvi", | ||
| "package_name": "simple_scvi", | ||
| "project_description": "External and simple implementation of scVI", | ||
| "author_full_name": "Adam Gayoso", | ||
| "author_email": "[email protected]", | ||
| "github_user": "adamgayoso", | ||
| "project_repo": "https://github.com/scverse/simple-scvi", | ||
| "license": "BSD 3-Clause License", | ||
| "_copy_without_render": [ | ||
| ".github/workflows/build.yaml", | ||
| ".github/workflows/test.yaml", | ||
| "docs/_templates/autosummary/**.rst" | ||
| ], | ||
| "_render_devdocs": false, | ||
| "_jinja2_env_vars": { | ||
| "lstrip_blocks": true, | ||
| "trim_blocks": true | ||
| }, | ||
| "_template": "https://github.com/scverse/cookiecutter-scverse" | ||
| } | ||
| }, | ||
| "directory": null | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,5 @@ | ||
| blank_issues_enabled: false | ||
| contact_links: | ||
| - name: Scverse Community Forum | ||
| url: https://discourse.scverse.org/ | ||
| about: If you have questions about “How to do X”, please ask them here. | ||
| - name: Scverse Community Forum | ||
| url: https://discourse.scverse.org/ | ||
| about: If you have questions about “How to do X”, please ask them here. |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,23 +1,29 @@ | ||
| name: Check Build | ||
|
|
||
| on: | ||
| push: | ||
| branches: [main] | ||
| pull_request: | ||
| branches: [main] | ||
| push: | ||
| branches: [main] | ||
| pull_request: | ||
| branches: [main] | ||
|
|
||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| jobs: | ||
| package: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Set up Python 3.10 | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: "3.10" | ||
| - name: Install build dependencies | ||
| run: python -m pip install --upgrade pip wheel twine build | ||
| - name: Build package | ||
| run: python -m build | ||
| - name: Check package | ||
| run: twine check --strict dist/*.whl | ||
| package: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Set up Python 3.10 | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: "3.10" | ||
| cache: "pip" | ||
| cache-dependency-path: "**/pyproject.toml" | ||
| - name: Install build dependencies | ||
| run: python -m pip install --upgrade pip wheel twine build | ||
| - name: Build package | ||
| run: python -m build | ||
| - name: Check package | ||
| run: twine check --strict dist/*.whl |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| name: Release | ||
|
|
||
| on: | ||
| release: | ||
| types: [published] | ||
|
|
||
| # Use "trusted publishing", see https://docs.pypi.org/trusted-publishers/ | ||
| jobs: | ||
| release: | ||
| name: Upload release to PyPI | ||
| runs-on: ubuntu-latest | ||
| environment: | ||
| name: pypi | ||
| url: https://pypi.org/p/simple_scvi | ||
| permissions: | ||
| id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| filter: blob:none | ||
| fetch-depth: 0 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: "3.x" | ||
| cache: "pip" | ||
| - run: pip install build | ||
| - run: python -m build | ||
| - name: Publish package distributions to PyPI | ||
| uses: pypa/gh-action-pypi-publish@release/v1 |
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