[release] Merge Develop into Master for 14.60.0

[github-actions]

Proposed Changes

• Add custom CodeMirror mode for barcode highlighting and duplicate det… #4793
• Bge fix request types #4778
• Create stock plates from tubes #4708
  • Closes Y25-105 - Create stock plate from tubes #4670
• Update column formatting for required fields in library manifests #4801
• Y24-365 - RVI GSLP Pipeline config #4779
  • Closes Y24-365 - As an R&D scientist I would like to have a separate submission and library type required for GSLP RVI project #4394
• Y24-447 - Resolved flaky test(s) for code coverage #4800
  • Closes Y24-447 - Address frequent Indirect Changes to code coverage #4495
• Y25 405 integrating codemirror #4791
• [fix] Set all volume defaults to 13 #4787
• [github]: Update codecov action to v5.4.0 #4806
• [ruby] Update activerecord-import 1.7.0 → 2.1.0 (major) #4795
• [ruby] Update bullet 7.2.0 → 8.0.1 (major) #4796
• [ruby] Update bunny 2.22.0 → 2.24.0 (minor) #4794
• [ruby] Update csv 3.3.2 → 3.3.3 (patch) #4773
• [ruby] Update exception_notification 4.5.0 → 5.0.0 (major) #4798
• [ruby] Update knapsack_pro 7.6.2 → 8.1.0 (major) #4799
• [ruby] Update pry-byebug 3.10.1 → 3.11.0 (minor) #4824
• [ruby] Update rspec-github 2.4.0 → 3.0.0 (major) #4792
• [ruby] Update rspec-rails 6.1.4 → 7.1.1 (major) #4790
• [ruby] Update rubocop-capybara 2.21.0 → 2.22.1 (minor) #4774
• [ruby] Update rubocop-factory_bot 2.26.1 → 2.27.1 (minor) #4775
• [ruby] Update rubocop-performance 1.22.1 → 1.24.0 (minor) #4789
• [ruby] Update rubocop-rails 2.26.2 → 2.30.3 (minor) #4788
• [ruby] Update uuidtools 2.2.0 → 3.0.0 (major) #4797
• 🚨 [security] [js] Update vite 5.4.14 → 5.4.16 (patch) #4808
• 🚨 [security] [ruby] Update rubocop-rspec_rails 2.30.0 → 2.31.0 (minor) #4760

Instructions for Reviewers

• Check stories are ready for release.
• Check for any database migrations.
• Check for debug code.
• Check version is appropriate.

Everything above the horizontal rule will be overwritten on the next push
This PR was auto-generated on 2025-04-08T11:46:30+01:00

---

Additional Context

None

[BenTopping]

@StephenHulme
One of the commits here #4794 contains the text 'closes # 701'. I think this is why the bunny update in the proposed changes is referencing an old and unrelated pull request. Maybe a small bug / edge case with the auto PR's proposed changes logic .

[StephenHulme]

@StephenHulme One of the commits here #4794 contains the text 'closes # 701'. I think this is why the bunny update in the proposed changes is referencing an old and unrelated pull request. Maybe a small bug / edge case with the auto PR's proposed changes logic .

Fixed now - well spotted and thanks for diagnosing 👌

[codecov]

Codecov Report

Attention: Patch coverage is 41.01124% with 105 lines in your changes missing coverage. Please review.

Please upload report for BASE (master@b8c3cdb). Learn more about missing BASE report.
Report is 206 commits behind head on master.

Files with missing lines	Patch %	Lines
app/controllers/plates_from_tubes_controller.rb	27.65%	68 Missing ⚠️
app/models/plate/creator.rb	21.21%	26 Missing ⚠️
app/models/lib_pool_norm_tube_generator.rb	0.00%	2 Missing ⚠️
lib/label_printer/pmb_client.rb	0.00%	2 Missing ⚠️
app/api/core/io/json/grammar.rb	0.00%	1 Missing ⚠️
app/controllers/admin/studies_controller.rb	0.00%	1 Missing ⚠️
app/helpers/assets_helper.rb	0.00%	1 Missing ⚠️
app/helpers/plates_helper.rb	50.00%	1 Missing ⚠️
app/models/flexible_submission.rb	0.00%	1 Missing ⚠️
app/models/linear_submission.rb	0.00%	1 Missing ⚠️
... and 1 more

Additional details and impacted files

@@            Coverage Diff            @@
##             master    #4786   +/-   ##
=========================================
  Coverage          ?   86.54%           
=========================================
  Files             ?     1408           
  Lines             ?    30432           
  Branches          ?        0           
=========================================
  Hits              ?    26338           
  Misses            ?     4094           
  Partials          ?        0           

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