Code

Template update#6

Code

Merged

muffato merged 40 commits intodevsanger-tol/ensemblrepeatdownload:devfrom template_updatesanger-tol/ensemblrepeatdownload:template_updateCopy head branch name to clipboardAug 11, 2023

+893-452

Commits

Commits on Jul 16, 2023

• Fixed the pipeline name

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  19b9f68

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• Template update for nf-core/tools version 2.6

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  c8e3b80

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• Merge branch 'TEMPLATE' into dev

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  7384fb8

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• Template update for nf-core/tools version 2.7

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• Template update for nf-core/tools version 2.8

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  5f4a6d1

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• Merge branch 'TEMPLATE' into dev

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  1eadc5d

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• Merge branch 'TEMPLATE' into dev

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  20726af

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• Merge branch 'TEMPLATE' into dev

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  a69b87f

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• Fixed the pipeline description

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  efd3e8d

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• Merge branch 'TEMPLATE' into dev

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  fe86440

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• Fixed the pipeline description

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  8f3174b

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• Merge branch 'TEMPLATE' into dev

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  9b92717

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• Fixed the example params.yaml

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  fbb6993

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• We do this through a profile

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• [linting] prettier

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• [linting] black

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  dc0df2c

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• modules update

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  841e44d

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• Fixed the Conda directives

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  88210f7

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• Fixed the wget conda package

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  89ff640

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• The quay.io prefix should now be skipped

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• Not needed

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• This file is now identical

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• we use prettier for the cff files

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• Now need nf-core 2.8

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  f7b0b23

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• Moved from sanger-tol to local

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• We don't use MultiQC

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Commits on Jul 31, 2023

• The template was erroneously hardcoding sanger-tol/readmapping

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  0d89fe2

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• Added a redirection notice to the pipeline website

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  2fb30e0

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• The convention is now to put all the pipeline_info files in per-pipeline sub-directories

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Commits on Aug 4, 2023

• Updated the DOI

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  c1bb5e0

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• Fixed the README

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  46d5213

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• Added the code of conduct

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  e45b9b1

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• Aligned with the template

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  e9f36b5

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• Added some instructions about fetching the Ensembl parameters

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  4f56065

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• Added the farm tests (through Tower)

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  c6d8874

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• Conda syntax

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  44126ff

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• Fixed the example

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  bee8e2d

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• Fixed the example

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Commits on Aug 11, 2023

• The warning should be on the README too

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• Latest nomenclature

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