IOSS: Update TextMesh to handle extended shell ordinals to the edges #2036
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This is a basic workflow to help you get started with Actions | |
| name: SEACAS Variant builds | |
| # Controls when the action will run. Triggers the workflow on push | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.workflow}}-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| build-deps: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| compiler: [ gnu, clang, mpi ] | |
| hdf5: [ V114 ] | |
| netcdf: [ 4.9.2 ] | |
| cgns: [ 4.4.0 ] | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| egress-policy: audit | |
| - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev openmpi-bin libopenmpi-dev libboost-all-dev | |
| ### | |
| # Installing TPL | |
| ### | |
| - name: Cache TPL-${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| id: cache-TPL-mpi | |
| uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| with: | |
| path: ~/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| key: TPL-v2-${{ runner.os }}-${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| - name: Build TPL-${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| if: steps.cache-TPL.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| COMPILER=${{ matrix.compiler }} H5VERSION=${{ matrix.hdf5}} GNU_PARALLEL=OFF INSTALL_PATH=${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} ./install-tpl.sh | |
| ls ${HOME} && ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} && ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }}/lib | |
| build: | |
| needs: build-deps | |
| # The type of runner that the job will run on | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| hdf5: [ V114 ] | |
| netcdf: [ 4.9.2 ] | |
| cgns: [ 4.4.0 ] | |
| config: | |
| - { | |
| name: "Debug serial build", | |
| os: ubuntu-latest, | |
| compiler: "gnu", | |
| debug: "YES", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "Debug parallel build", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "YES", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "Threadsafe ON, No Fortran", | |
| os: ubuntu-latest, | |
| compiler: "gnu", | |
| debug: "YES", | |
| threadsafe: "YES", | |
| fortran: "NO", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "thread" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "Threadsafe ON, Parallel, No Fortran", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "YES", | |
| threadsafe: "YES", | |
| fortran: "NO", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "thread" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "Sanitize address, no fortran", | |
| os: ubuntu-latest, | |
| compiler: "clang", | |
| debug: "YES", | |
| threadsafe: "NO", | |
| fortran: "NO", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "address" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "Sanitize undefined", | |
| os: ubuntu-latest, | |
| compiler: "clang", | |
| debug: "YES", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "undefined" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "Sanitize integer", | |
| os: ubuntu-latest, | |
| compiler: "clang", | |
| debug: "YES", | |
| threadsafe: "NO", | |
| fortran: "NO", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "integer" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "GTest Enabled", | |
| os: ubuntu-latest, | |
| compiler: "gnu", | |
| debug: "YES", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "YES", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "No applications, legacy, or fortran", | |
| os: ubuntu-latest, | |
| compiler: "clang", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "NO", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "APPLICATIONS=NO LEGACY=NO", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "CATALYST2, parallel", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "YES", | |
| gtest: "YES", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "KOKKOS, parallel", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "YES", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "No deprecated exodus functions", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "OMIT_DEPRECATED=YES", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "Use modern CMake configure of netCDF and HDF5 packages with GTest", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "YES", | |
| extra: "MODERN=YES", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "ADIOS2 enabled", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "YES", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "YES", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "FAODEL and METIS enabled", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "YES", | |
| use_metis: "YES", | |
| use_catalyst2: "NO", | |
| gtest: "YES", | |
| extra: "", | |
| extra_args: "", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "C++20 build serial clang", | |
| os: ubuntu-latest, | |
| compiler: "clang", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "-DCMAKE_CXX_STANDARD:STRING=20", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "C++20 build serial gnu", | |
| os: ubuntu-latest, | |
| compiler: "gnu", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "-DCMAKE_CXX_STANDARD:STRING=20", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| - { | |
| name: "C++20 build parallel", | |
| os: ubuntu-latest, | |
| compiler: "mpi", | |
| debug: "NO", | |
| threadsafe: "NO", | |
| fortran: "YES", | |
| use_kokkos: "NO", | |
| use_adios2: "NO", | |
| use_faodel: "NO", | |
| use_metis: "NO", | |
| use_catalyst2: "NO", | |
| gtest: "NO", | |
| extra: "", | |
| extra_args: "-DCMAKE_CXX_STANDARD:STRING=20", | |
| sanitizer: "NO" # address, integer, thread, memory, undefined | |
| } | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| egress-policy: audit | |
| - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev openmpi-bin libopenmpi-dev libboost-all-dev | |
| - name: Fetch TPL Cache | |
| id: cache-TPL | |
| uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| with: | |
| path: ~/environments/${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| key: TPL-v2-${{ runner.os }}-${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME} && ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} && ls ${HOME}/environments/${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }}/lib | |
| - name: install additional TPL | |
| if: ${{ matrix.config.use_kokkos == 'YES' || matrix.config.use_adios2 == 'YES' || matrix.config.gtest == 'YES' || matrix.config.use_faodel == 'YES' || matrix.config.use_catalyst == 'YES' || matrix.config.use_metis == 'YES' }} | |
| run: | | |
| set -x | |
| COMPILER=${{ matrix.config.compiler }} KOKKOS=${{ matrix.config.use_kokkos }} ADIOS2=${{ matrix.config.use_adios2 }} CATALYST2=${{ matrix.config.use_catalyst2 }} FAODEL=${{ matrix.config.use_faodel }} METIS=${{ matrix.config.use_metis }} GNU_PARALLEL=OFF GTEST=${{ matrix.config.gtest }} INSTALL_PATH=${HOME}/environments/${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} ./install-tpl.sh | |
| ls ${HOME} && ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} && ls ${HOME}/environments/${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Run cmake | |
| shell: bash -l {0} | |
| run: | | |
| echo $HOME | |
| mkdir build | |
| cd build | |
| NUMPROCS=2 ${{ matrix.config.extra }} THREADSAFE=${{ matrix.config.threadsafe }} DEBUG=${{ matrix.config.debug }} FORTRAN=${{ matrix.config.fortran }} SANITIZER=${{ matrix.config.sanitizer }} COMPILER=${{ matrix.config.compiler }} INSTALL_PATH=${HOME}/environments/${{ matrix.config.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} bash ../cmake-config ${{ matrix.config.extra_args }} | |
| - name: Build | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| make -j 4 | |
| if: ${{ success() }} | |
| - name: Install | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| make -j 4 install | |
| if: ${{ success() }} | |
| - name: Run Non-sanitized Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| ctest -j 4 --output-on-failure | |
| if: ${{ success() && matrix.config.sanitizer == 'NO' && matrix.config.threadsafe == 'NO' }} | |
| - name: Run sanitized/threadsafe Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| sudo sysctl vm.mmap_rnd_bits=28 | |
| ctest -j 4 --output-on-failure --exclude-regex test_exo | |
| if: ${{ success() && (matrix.config.sanitizer != 'NO' || matrix.config.threadsafe != 'NO') }} | |